ISO calling

For several decades, Science & Technology Studies (STS) have highlighted the central role of norms and standards in the construction and circulation of technoscientific and biomedical knowledge. However, two blind spots persist: on the one hand, the standardization of bioinformatics practices, essential in contemporary biomedicine, remains underexplored; on the other hand, preparations for standardization trials (tests, evaluations, audits) are rarely studied. This article partially fills these gaps by documenting the preparation for a standardization trial of a bioinformatics pipeline within a Swiss center specialized in computational genomics. Based on a four-month ethnographic study, it analyzes how a team of bioinformaticians compares two software suites – GATK and DRAGEN – for variant calling, as part of their efforts to meet the ISO 15189 standard for quality in biomedical laboratories. The study highlights the strategies implemented to identify, qualify, and negotiate discrepancies between these software tools, highlighting the room for interpretation inherent in bioinformatics standardization processes. The study also offers a broader reflection on the articulation between standardization and preparation in bioinformatics, suggesting that these trials are not limited to technical procedures but also involve creative work in optimization and anticipation. By revealing the dynamics of power, negotiation and adaptation that feed standardization practices in bioinformatics, this analysis contributes to a better understanding of the role of standards in the evolution of biomedical infrastructures that support the implementation of so-called personalized or precision medicine.

Authors

Institutions

Publication Details

Journal
Revue d anthropologie des connaissances
Published
2025-01-01
DOI
https://doi.org/10.4000/14k4b
Primary Topic
Marine Ecology and Invasive Species
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

ISO calling

Florian Jaton
1 links
Revue d anthropologie des connaissances
Marine Ecology and Invasive Species
article

ISO calling

Florian Jaton
article en

Abstract

For several decades, Science & Technology Studies (STS) have highlighted the central role of norms and standards in the construction and circulation of technoscientific and biomedical knowledge. However, two blind spots persist: on the one hand, the standardization of bioinformatics practices, essential in contemporary biomedicine, remains underexplored; on the other hand, preparations for standardization trials (tests, evaluations, audits) are rarely studied. This article partially fills these gaps by documenting the preparation for a standardization trial of a bioinformatics pipeline within a Swiss center specialized in computational genomics. Based on a four-month ethnographic study, it analyzes how a team of bioinformaticians compares two software suites – GATK and DRAGEN – for variant calling, as part of their efforts to meet the ISO 15189 standard for quality in biomedical laboratories. The study highlights the strategies implemented to identify, qualify, and negotiate discrepancies between these software tools, highlighting the room for interpretation inherent in bioinformatics standardization processes. The study also offers a broader reflection on the articulation between standardization and preparation in bioinformatics, suggesting that these trials are not limited to technical procedures but also involve creative work in optimization and anticipation. By revealing the dynamics of power, negotiation and adaptation that feed standardization practices in bioinformatics, this analysis contributes to a better understanding of the role of standards in the evolution of biomedical infrastructures that support the implementation of so-called personalized or precision medicine.

Revue d anthropologie des connaissancesVol. 19(3)
California State University System (US), Eaton (Taiwan) (TW), Université Paris Sciences et Lettres (FR), École Polytechnique Fédérale de Lausanne (CH), University of Lausanne (CH)
Openalex Percentile: Top 78%
Marine Ecology and Invasive Species
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.