Energetics of tryptophan residues in electron transfer and photoprotection of type-II photosynthetic reaction centers

Tryptophan is the strongest UV chromophore in proteins, and its biosynthesis is the most energy-consuming among all amino acids. In the transmembrane region of purple bacterial photosynthetic reaction centers (PbRC), tryptophan residues are densely concentrated near the inactive electron-transfer branch in subunit M, forming part of the carotenoid binding site. We investigated the redox potentials (<i>E</i> <sub>m</sub>) of tryptophan residues in PbRC and O<sub>2</sub>-evolving photosystem II (PSII) by solving the linear Poisson-Boltzmann equation, considering equilibrium with all titratable sites in the entire protein. The tryptophan mediating superexchange electron transfer between the active (bacterio)pheophytin and primary quinone exhibits the highest <i>E</i> <sub>m</sub> value in both PbRC and PSII. In contrast, in PSII, D1-Trp14, oxidized under strong light to trigger the degradation of photodamaged D1 protein, has the lowest <i>E</i> <sub>m</sub> value. In PbRC, a chain of tryptophan residues near the inactive branch forms an <i>E</i> <sub>m</sub> cascade. Quantum mechanical/molecular mechanical calculations suggest that this chain enables electron hole hopping toward the carotenoid, effectively dissipating harmful UV energy. This mechanism likely reflects the photoprotective strategy of PbRC, focusing on UV tolerance rather than oxidative stress.

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Publication Details

Journal
PNAS Nexus
Published
2025-08-30
DOI
https://doi.org/10.1093/pnasnexus/pgaf278
Citations
1
Primary Topic
Photosynthetic Processes and Mechanisms
Type
article
Field-Weighted Citation Impact
0.81

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article

Energetics of tryptophan residues in electron transfer and photoprotection of type-II photosynthetic reaction centers

Keisuke Saito, Tomoyasu Noji, Hiroshi Ishikita
1 citations
PNAS Nexus
Photosynthetic Processes and Mechanisms
0.81
article

Energetics of tryptophan residues in electron transfer and photoprotection of type-II photosynthetic reaction centers

Keisuke Saito, Tomoyasu Noji, Hiroshi Ishikita
article en
1 citations

Abstract

Tryptophan is the strongest UV chromophore in proteins, and its biosynthesis is the most energy-consuming among all amino acids. In the transmembrane region of purple bacterial photosynthetic reaction centers (PbRC), tryptophan residues are densely concentrated near the inactive electron-transfer branch in subunit M, forming part of the carotenoid binding site. We investigated the redox potentials (<i>E</i> <sub>m</sub>) of tryptophan residues in PbRC and O<sub>2</sub>-evolving photosystem II (PSII) by solving the linear Poisson-Boltzmann equation, considering equilibrium with all titratable sites in the entire protein. The tryptophan mediating superexchange electron transfer between the active (bacterio)pheophytin and primary quinone exhibits the highest <i>E</i> <sub>m</sub> value in both PbRC and PSII. In contrast, in PSII, D1-Trp14, oxidized under strong light to trigger the degradation of photodamaged D1 protein, has the lowest <i>E</i> <sub>m</sub> value. In PbRC, a chain of tryptophan residues near the inactive branch forms an <i>E</i> <sub>m</sub> cascade. Quantum mechanical/molecular mechanical calculations suggest that this chain enables electron hole hopping toward the carotenoid, effectively dissipating harmful UV energy. This mechanism likely reflects the photoprotective strategy of PbRC, focusing on UV tolerance rather than oxidative stress.

PNAS NexusVol. 4(9)
The University of Tokyo (JP)
University of Tsukuba, Japan Society for the Promotion of Science
Openalex Percentile: Top 24%
Photosynthetic Processes and Mechanisms
0.81
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