Chemistry of Sugar Formation in the Gas Phase: Following the Activated Aldehyde

Sugars are produced by living organisms, and are required building blocks for life as we know it, which raises the foundational question of how sugars formed in a prebiotic environment. The abiotic formose reaction produces sugars from formaldehyde, but our understanding of its initiation step remains murky, with chemists invoking the concept of an "activated aldehyde" to seed this reaction. Singlet hydroxycarbenes, high-energy isomers of aldehydes, were recently reported to facilitate sugar formation under cold, nonaqueous conditions relevant to interstellar environments. We generate singlet methylhydroxycarbene (<sup>1</sup>CH<sub>3</sub>-C̈-OH) from the photodissociation of pyruvic acid and experimentally measure its gas-phase reaction with <i>d</i><sub>4</sub>-acetaldehyde using multiplexed photoionization mass spectrometry. The C<sub>4</sub>H<sub>4</sub>D<sub>4</sub>O<sub>2</sub> isomer <i>d</i><sub>4</sub>-acetoin is the sole product, which we kinetically link to the reactant CH<sub>3</sub>-C̈-OH, and attribute to a carbonyl-ene formation mechanism. We see no evidence of 3-hydroxybutanal, the C-H insertion product expected in carbene chemistry. Using automated exploration we calculate stationary points on the potential energy surface and report master equation rate coefficients from <i>T</i> = 20-600 K, providing quantitative kinetics of this fast reaction for use in chemical models. The prereactive complex in this reaction is stabilized by both hydrogen bonding and electrophilic carbene C═O interactions. These effects create a short-range dynamical bottleneck for the reaction besides the long- and midrange barrierless bottlenecks. Combined with recent reports of <sup>1</sup>HC̈OH production from methanol photodissociation and pyruvic acid production in cold irradiated ices, this work provides evidence that singlet hydroxycarbene + aldehyde chemistry is a feasible path to prebiotic sugar formation.

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Publication Details

Journal
Journal of the American Chemical Society
Published
2025-09-01
DOI
https://doi.org/10.1021/jacs.5c05357
Citations
3
Primary Topic
Molecular Spectroscopy and Structure
Type
article
Field-Weighted Citation Impact
2.27

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article

Chemistry of Sugar Formation in the Gas Phase: Following the Activated Aldehyde

Judit Zádor, H. Reisler, David L. Osborn, Bibek Samanta et al.
3 citations
Journal of the American Chemical Society
Molecular Spectroscopy and Structure
2.27
article

Chemistry of Sugar Formation in the Gas Phase: Following the Activated Aldehyde

Judit Zádor, H. Reisler, David L. Osborn, Bibek Samanta, Clément Soulié
article en
3 citations

Abstract

Sugars are produced by living organisms, and are required building blocks for life as we know it, which raises the foundational question of how sugars formed in a prebiotic environment. The abiotic formose reaction produces sugars from formaldehyde, but our understanding of its initiation step remains murky, with chemists invoking the concept of an "activated aldehyde" to seed this reaction. Singlet hydroxycarbenes, high-energy isomers of aldehydes, were recently reported to facilitate sugar formation under cold, nonaqueous conditions relevant to interstellar environments. We generate singlet methylhydroxycarbene (<sup>1</sup>CH<sub>3</sub>-C̈-OH) from the photodissociation of pyruvic acid and experimentally measure its gas-phase reaction with <i>d</i><sub>4</sub>-acetaldehyde using multiplexed photoionization mass spectrometry. The C<sub>4</sub>H<sub>4</sub>D<sub>4</sub>O<sub>2</sub> isomer <i>d</i><sub>4</sub>-acetoin is the sole product, which we kinetically link to the reactant CH<sub>3</sub>-C̈-OH, and attribute to a carbonyl-ene formation mechanism. We see no evidence of 3-hydroxybutanal, the C-H insertion product expected in carbene chemistry. Using automated exploration we calculate stationary points on the potential energy surface and report master equation rate coefficients from <i>T</i> = 20-600 K, providing quantitative kinetics of this fast reaction for use in chemical models. The prereactive complex in this reaction is stabilized by both hydrogen bonding and electrophilic carbene C═O interactions. These effects create a short-range dynamical bottleneck for the reaction besides the long- and midrange barrierless bottlenecks. Combined with recent reports of <sup>1</sup>HC̈OH production from methanol photodissociation and pyruvic acid production in cold irradiated ices, this work provides evidence that singlet hydroxycarbene + aldehyde chemistry is a feasible path to prebiotic sugar formation.

Journal of the American Chemical SocietyVol. 147(36)
University of Southern California (US), Sandia National Laboratories California (US), California Southern University (US), University of California System (US), Sandia National Laboratories (US), University of California, Davis (US)
Basic Energy Sciences
Openalex Percentile: Top 11%
Molecular Spectroscopy and Structure
2.27
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