Different Elemental Compositions and Potential Functions of Vacuoles in <i>Bolivina spissa</i> (Foraminifera, Rhizaria) Based on Cryo‐SEM‐EDS Analyses

Benthic Foraminifera exhibit diverse adaptations to low oxygen (O<sub>2</sub>) environments, including denitrification, a rare trait among eukaryotes. Denitrifying species store intracellular nitrate (NO<sub>3</sub> <sup>-</sup>), possibly within vacuoles, and contribute significantly to the global marine nitrogen (N) cycle. Additionally, widespread phosphate (PO<sub>4</sub> <sup>3-</sup>) accumulation suggests a role in supporting metabolism under O<sub>2</sub>-depleted conditions. However, the organelles storing NO<sub>3</sub> <sup>-</sup> and PO<sub>4</sub> <sup>3-</sup> remain unknown, limiting the mechanistic understanding of these alternative metabolic pathways. To investigate the intracellular NO<sub>3</sub> <sup>-</sup> and PO<sub>4</sub> <sup>3-</sup> localization in the benthic foraminifera Bolivina spissa, experimental incubations under varying O<sub>2</sub> and NO<sub>3</sub> <sup>-</sup> conditions followed by cryogenic fixation and scanning electron microscopy-energy dispersive spectroscopy (SEM-EDS) analyses were carried out. Most vacuoles were enriched in N relative to the surrounding cytoplasm, likely representing the intracellular NO<sub>3</sub> <sup>-</sup> reservoir. The elemental mapping also confirmed phosphorus (P) enrichment in organelles resembling acidocalcisomes, likely as PO<sub>4</sub> <sup>3-</sup>, which may serve as a readily available energy source used over NO<sub>3</sub> <sup>-</sup> storage during the transition between aerobic and anaerobic respiration. Additionally, barium-rich vacuoles of unknown function(s) display a unique spatial distribution. This study emphasizes the effectiveness of cryogenic techniques in elucidating metabolic processes in foraminifers and other large and/or testate unicellular organisms, particularly for studying soluble compounds that have rarely been investigated.

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Journal
Journal of Eukaryotic Microbiology
Published
2025-08-31
DOI
https://doi.org/10.1111/jeu.70044
Primary Topic
Paleontology and Stratigraphy of Fossils
Type
article
Field-Weighted Citation Impact
0.00

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article

Different Elemental Compositions and Potential Functions of Vacuoles in Bolivina spissa (Foraminifera, Rhizaria) Based on Cryo‐SEM‐EDS Analyses

Yoshiyuki Ishitani, Satoshi Okada, Hidetaka Nomaki, Julien Richirt et al.
Journal of Eukaryotic Microbiology
Paleontology and Stratigraphy of Fossils
article

Different Elemental Compositions and Potential Functions of Vacuoles in Bolivina spissa (Foraminifera, Rhizaria) Based on Cryo‐SEM‐EDS Analyses

Yoshiyuki Ishitani, Satoshi Okada, Hidetaka Nomaki, Julien Richirt, Nicolaas Glock, Katsuyuki Uematsu
article en

Abstract

Benthic Foraminifera exhibit diverse adaptations to low oxygen (O<sub>2</sub>) environments, including denitrification, a rare trait among eukaryotes. Denitrifying species store intracellular nitrate (NO<sub>3</sub> <sup>-</sup>), possibly within vacuoles, and contribute significantly to the global marine nitrogen (N) cycle. Additionally, widespread phosphate (PO<sub>4</sub> <sup>3-</sup>) accumulation suggests a role in supporting metabolism under O<sub>2</sub>-depleted conditions. However, the organelles storing NO<sub>3</sub> <sup>-</sup> and PO<sub>4</sub> <sup>3-</sup> remain unknown, limiting the mechanistic understanding of these alternative metabolic pathways. To investigate the intracellular NO<sub>3</sub> <sup>-</sup> and PO<sub>4</sub> <sup>3-</sup> localization in the benthic foraminifera Bolivina spissa, experimental incubations under varying O<sub>2</sub> and NO<sub>3</sub> <sup>-</sup> conditions followed by cryogenic fixation and scanning electron microscopy-energy dispersive spectroscopy (SEM-EDS) analyses were carried out. Most vacuoles were enriched in N relative to the surrounding cytoplasm, likely representing the intracellular NO<sub>3</sub> <sup>-</sup> reservoir. The elemental mapping also confirmed phosphorus (P) enrichment in organelles resembling acidocalcisomes, likely as PO<sub>4</sub> <sup>3-</sup>, which may serve as a readily available energy source used over NO<sub>3</sub> <sup>-</sup> storage during the transition between aerobic and anaerobic respiration. Additionally, barium-rich vacuoles of unknown function(s) display a unique spatial distribution. This study emphasizes the effectiveness of cryogenic techniques in elucidating metabolic processes in foraminifers and other large and/or testate unicellular organisms, particularly for studying soluble compounds that have rarely been investigated.

Journal of Eukaryotic MicrobiologyVol. 72(5)
Japan Agency for Marine-Earth Science and Technology (JP), Universität Hamburg (DE), Japan Steel Works (Japan) (JP), Hamburg Institut (Germany) (DE), Naval Hospital Yokosuka Japan (JP)
Japan Society for the Promotion of Science
Openalex Percentile: Top 90%
Paleontology and Stratigraphy of Fossils
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