Chromosome-level genome assembly of the caddisfly Stenopsyche angustata (Insecta: Trichoptera)

Stenopsyche angustata, a species within the diverse order Trichoptera, is widely distributed across freshwater environments and exhibits unique ecological traits that make it an ideal subject for studying adaptive evolution. In this study, we employed Illumina second-generation sequencing, PacBio third-generation sequencing, along with high-throughput chromosome conformation capture (Hi-C) technologies to generate raw sequencing data and construct chromosome-level genome assemblies of S. angustata. The final genome assembly size was 510.47 Mb, with scaffold N50 length of 39.81 Mb. The genome was successfully anchored to 13 pseudochromosomes, and a total of 10,699 protein-coding genes were identified. The genome contained 44.92% repeat sequences and 1,004 non-coding RNAs. Moreover, a total of 10,699 protein-encoding genes were predicted, representing 97.7% of the total genes. This comprehensive genomic analysis unveil crucial details about the genetic makeup of S. angustata, providing a foundation for understanding of the evolutionary processes and ecological functions of this species.

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Publication Details

Journal
Scientific Data
Published
2025-09-01
DOI
https://doi.org/10.1038/s41597-025-05602-8
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Chromosome-level genome assembly of the caddisfly Stenopsyche angustata (Insecta: Trichoptera)

Yuwei He, Xinze Liu, Yuting Qin, Yueying Wu et al.
Scientific Data
Environmental DNA in Biodiversity Studies
article

Chromosome-level genome assembly of the caddisfly Stenopsyche angustata (Insecta: Trichoptera)

Yuwei He, Xinze Liu, Yuting Qin, Yueying Wu, Xifa Zhong, Yichuan Zhang, Honglin Qin, Yujun Wang, Hong Wang, Yimin Li, Jisheng Li
article en

Abstract

Stenopsyche angustata, a species within the diverse order Trichoptera, is widely distributed across freshwater environments and exhibits unique ecological traits that make it an ideal subject for studying adaptive evolution. In this study, we employed Illumina second-generation sequencing, PacBio third-generation sequencing, along with high-throughput chromosome conformation capture (Hi-C) technologies to generate raw sequencing data and construct chromosome-level genome assemblies of S. angustata. The final genome assembly size was 510.47 Mb, with scaffold N50 length of 39.81 Mb. The genome was successfully anchored to 13 pseudochromosomes, and a total of 10,699 protein-coding genes were identified. The genome contained 44.92% repeat sequences and 1,004 non-coding RNAs. Moreover, a total of 10,699 protein-encoding genes were predicted, representing 97.7% of the total genes. This comprehensive genomic analysis unveil crucial details about the genetic makeup of S. angustata, providing a foundation for understanding of the evolutionary processes and ecological functions of this species.

Scientific DataVol. 12(1)
Chengde Medical University (CN), Beibu Gulf University (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 77%
Environmental DNA in Biodiversity Studies
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Chromosome-level genome assembly of the caddisfly Stenopsyche angustata (Insecta: Trichoptera) — Yuwei He, Xinze Liu, et al. · Scientific Data (2025) | TGRS Research Map | TGRS