From the Valley of Death to Human-Centric Precision Medicine: The REPO4EU Platform and its Transition into REPOSYSTEM
<p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="first" dir="auto" id="d21861250e103">Decades of <b> investment in translational medicine have failed</b> to deliver curative therapies for most chronic diseases. <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/Bki3" id="d21861250e108" target="xrefwindow">1</a> The causes are well known: symptom- and organ-based <b>disease definitions</b>, <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/CEzE+otyd" id="d21861250e114" target="xrefwindow">2,3</a> animal models with poor predictive validity, <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/ay82+pbYd" id="d21861250e117" target="xrefwindow">4,5</a> the scarcity of affordable <b>investigator-initiated trials</b>, <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/MHZU+gQFs+OmRP" id="d21861250e124" target="xrefwindow">6–8</a> and a <b>reproducibility</b> crisis in biomedical research. Together, these factors create the “v <b>alley of death</b>” between basic discoveries and clinical benefit. <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/2tnU" id="d21861250e133" target="xrefwindow">9</a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e136"> <b>REPO4EU</b> is a Horizon Europe flagship that addresses this crisis by building the first open, pan-European platform for mechanism-based disease re-definition and pairs it—for rapid and safe application—with drug repurposing. At its core lies a multi-agent system powered by applied network medicine <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/RDLA" id="d21861250e141" target="xrefwindow">10</a>, AI <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/DIHS" id="d21861250e144" target="xrefwindow">11</a>, and mechanistic disease modules <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/TcQR+ALqz+kq2q" id="d21861250e147" target="xrefwindow">12–14</a>—small, reversible protein–protein interaction dysfunctions that represent the true causal units of disease. This framework allows patient stratification by mechanism, the rational combination of approved drugs, <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/0DoN" id="d21861250e150" target="xrefwindow">15</a> and adaptive Phase IIa/b proof-of-concept trials that are lean, low-cost, and curative rather than symptomatic. <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e153">The <b>platform</b> already integrates: <div xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="list"> <a class="named-anchor" id="d21861250e158"> <!-- named anchor --> </a> <ul> <li id="d21861250e159"> <div class="so-custom-list-content so-ol"> <p class="first" dir="auto" id="d21861250e160">Computational tools (Drugst.One DREAM, AI pipelines for module discovery and prioritisation); </div> </li> <li id="d21861250e162"> <div class="so-custom-list-content so-ol"> <p class="first" dir="auto" id="d21861250e163">Preclinical validation in patient-derived cells and organoids, plus genetic disease model phenotyping via INFRAFRONTIER; <a data-untrusted="" href="https://paperpile.com/c/ndWE3k/TcQR+tmj3+4uBm+qWTt+BthX+Hbmv" id="d21861250e165" target="xrefwindow">12,16–20</a> </div> </li> <li id="d21861250e168"> <div class="so-custom-list-content so-ol"> <p class="first" dir="auto" id="d21861250e169">Companion diagnostics linked to BBMRI biobanks; </div> </li> <li id="d21861250e171"> <div class="so-custom-list-content so-ol"> <p class="first" dir="auto" id="d21861250e172">Investigator-initiated trial templates (based on REPO-HFPEF, REPO-STROKE, and CIPER), atrial-site database,and new pilot trials(REPO-HYPER, REPO-DIPG, REPO-THYROID). </div> </li> </ul> </div><p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e174">The next step is <b>REPOSYSTEM</b>, a pan-European Research Infrastructure now in preparation to ensure sustainability and scale. REPOSYSTEM will provide a sustainable operations hub—the Brandenburg Institute for Systems Medicine—and integrate seamlessly with existing infrastructures: <div xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" class="list"> <a class="named-anchor" id="d21861250e179"> <!-- named anchor --> </a> <ul> <li id="d21861250e180"> <div class="so-custom-list-content so-ol"> <p class="first" dir="auto" id="d21861250e181"> <b>INFRAFRONTIER</b> for mechanistic validation in genetic disease models (cellular and animal); </div> </li> <li id="d21861250e186"> <div class="so-custom-list-content so-ol"> <p class="first" dir="auto" id="d21861250e187"> <b>BBMRI-ERIC</b> for access to biobanks and diagnostic pipelines; </div> </li> <li id="d21861250e192"> <div class="so-custom-list-content so-ol"> <p class="first" dir="auto" id="d21861250e193"> <b>ELIXIR</b> for data standards, FAIRification, and large-scale integration of omics and clinical datasets. </div> </li> </ul> </div><p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e198">This synergy establishes the missing link in the <b>European Research Area</b>: a human-centric precision medicine-enabling ecosystem that moves beyond descriptive, hypothesis-driven “translational medicine” and—in combination with drug repurposing— instead implements a reproducible, mechanistic, and scalable pathway from discovery to rapid cure. <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e203">REPO4EU demonstrates feasibility and initiates a paradigm shift in medicine. REPOSYSTEM will secure Europe’s global leadership by building the first multinational infrastructure where diseases are defined by mechanisms, diagnostics detect causal dysfunctions, and repurposed drugs restore health. <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e205"> <b>Suggested readings</b> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e210">1. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/Bki3" id="d21861250e212" target="xrefwindow">Contopoulos-Ioannidis, D. G., Ntzani, E. E. & Ioannidis, J. P. A. Translation of highly promising basic science research into clinical applications. Am. J. Med. 114, 477–484 (2003). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e215">2. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/CEzE" id="d21861250e217" target="xrefwindow">Schmidt, H. H. H. W. The End of Medicine as We Know It - and Why Your Health Has a Future. (Springer Nature, 2022). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e221">3. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/otyd" id="d21861250e223" target="xrefwindow">Goh, K.-I. et al. The human disease network. Proceedings of the National Academy of Sciences 104, 8685–8690 (2007). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e226">4. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/ay82" id="d21861250e228" target="xrefwindow">Pound, P. & Ritskes-Hoitinga, M. Is it possible to overcome issues of external validity in preclinical animal research? Why most animal models are bound to fail. J Transl Med 16, 304 (2018). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e231">5. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/pbYd" id="d21861250e233" target="xrefwindow">Atkins, J. T. et al. Pre-clinical animal models are poor predictors of human toxicities in phase 1 oncology clinical trials. Br J Cancer 123, 1496–1501 (2020). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e236">6. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/MHZU" id="d21861250e238" target="xrefwindow">Ma, M.-W. et al. Integration of Multiparameter MRI into Conventional Pretreatment Risk Factors to Predict Positive Surgical Margins After Radical Prostatectomy. Clin Genitourin Cancer 22, 281–290.e1 (2024). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e241">7. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/gQFs" id="d21861250e243" target="xrefwindow">Goldacre, B. et al. Compliance with requirement to report results on the EU Clinical Trials Register: cohort study and web resource. BMJ 362, k3218 (2018). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e246">8. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/OmRP" id="d21861250e248" target="xrefwindow">Editorial. An audience with Patrick Vallance. Nat. Rev. Drug Discov. 9, 834 (2010).</a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e251">9. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/2tnU" id="d21861250e253" target="xrefwindow">Seyhan, A. A. Lost in translation: the valley of death across preclinical and clinical divide – identification of problems and overcoming obstacles. Transl. Med. Commun. 4, (2019). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e256">10. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/RDLA" id="d21861250e258" target="xrefwindow">Barabási, A.-L., Gulbahce, N. & Loscalzo, J. L. Network medicine: a network-based approach to human disease. Nat. Rev. Genet. 12, 56–68 (2011). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e261">11. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/DIHS" id="d21861250e263" target="xrefwindow">Altucci, L. et al. Artificial intelligence and network medicine: Path to precision medicine. NEJM AI 2, (2025). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e266">12. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/TcQR" id="d21861250e268" target="xrefwindow">Casas, A. I. et al. Synergistic network pharmacology: Preclinical validation and clinical safety in acute ischemic stroke. J. Am. Heart Assoc. e039098 (2025). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e271">13. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/ALqz" id="d21861250e273" target="xrefwindow">Nogales, C. et al. Network pharmacology: curing causal mechanisms instead of treating symptoms. Trends Pharmacol. Sci. (2021) doi: </a> <a data-untrusted="" href="http://dx.doi.org/10.1016/j.tips.2021.11.004" id="d21861250e276" target="xrefwindow">10.1016/j.tips.2021.11.004</a> <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/ALqz" id="d21861250e279" target="xrefwindow">.</a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e283">14. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/kq2q" id="d21861250e285" target="xrefwindow">Elbatreek, M. H. et al. NOX5-induced uncoupling of endothelial NO synthase is a causal mechanism and theragnostic target of an age-related hypertension endotype. PLoS Biol. 18, e3000885 (2020). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e288">15. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/0DoN" id="d21861250e290" target="xrefwindow">Sedding, D. et al. Nutritional L-citrulline and tetrahydrobiopterin in peripheral artery disease. JACC Adv. 4, 101590 (2025). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e293">16. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/tmj3" id="d21861250e295" target="xrefwindow">Kleinschnitz, C. et al. NOS knockout or inhibition but not disrupting PSD-95-NOS interaction protect against ischemic brain damage. J. Cereb. Blood Flow Metab. 36, 1508–1512 (2016). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e298">17. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/4uBm" id="d21861250e300" target="xrefwindow">Casas, A. I. et al. NOX4-dependent neuronal autotoxicity and BBB breakdown explain the superior sensitivity of the brain to ischemic damage. Proc. Natl. Acad. Sci. U. S. A. 114, 12315–12320 (2017). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e303">18. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/qWTt" id="d21861250e305" target="xrefwindow">Langhauser, F. et al. A diseasome cluster-based drug repurposing of soluble guanylate cyclase activators from smooth muscle relaxation to direct neuroprotection. npj Systems Biology and Applications 4, 8 (2018). </a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e308">19. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/BthX" id="d21861250e310" target="xrefwindow">Casas, A. I. et al. From single drug targets to synergistic network pharmacology in ischemic stroke. Proc. Natl. Acad. Sci. U. S. A. (2019) doi: </a> <a data-untrusted="" href="http://dx.doi.org/10.1073/pnas.1820799116" id="d21861250e313" target="xrefwindow">10.1073/pnas.1820799116</a> <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/BthX" id="d21861250e316" target="xrefwindow">.</a> <p xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" dir="auto" id="d21861250e319">20. <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/Hbmv" id="d21861250e321" target="xrefwindow">Casas, A. I. et al. Calcium-dependent blood-brain barrier breakdown by NOX5 limits postreperfusion benefit in stroke. J. Clin. Invest. (2019) doi: </a> <a data-untrusted="" href="http://dx.doi.org/10.1172/JCI124283" id="d21861250e324" target="xrefwindow">10.1172/JCI124283</a> <a data-untrusted="" href="http://paperpile.com/b/ndWE3k/Hbmv" id="d21861250e327" target="xrefwindow">.</a>
Authors
- Harald H.H.W. Schmidt (ORCID: https://orcid.org/0000-0003-0419-5549)
Institutions
- University of Applied Sciences Potsdam (DE)
- Maastricht University (NL)
Publication Details
- Published
- 2025-08-31
- DOI
- https://doi.org/10.58647/rexpo.25000127.v1
- Primary Topic
- Biomedical and Engineering Education
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- HORIZON EUROPE Framework Programme