Identifying Spectral Biomarkers for Migratory Potential in Cancer Cells Using FTIR and O-PTIR Spectroscopy

Cancer is a leading cause of death worldwide, and incidence and mortality are growing rapidly. Metastasis, the occurrence of cancer at sites different from the primary tumor, can affect multiple organs, compromising their function or altering their metabolism, and eventually leads to death. In fact, metastasis is the main cause of death in the majority of cancer patients. Considering the severe implications of cancer on patient survival and quality of life, the early identification of metastases is pivotal in the effective treatment of cancer. Since routine diagnostic practice relies on a time-consuming staining process and the use of antibodies to detect selected molecular markers, it is limited by a lack of real-time data and the availability of molecular information. Against this background, techniques based on rapid chemical analysis to identify migratory properties are highly desirable. Fourier-Transform Infrared (FTIR) spectroscopy has a long history in the label-free identification of infrared marker bands for cancer detection. However, it requires extensive post-processing of the acquired spectra, is not suitable for analysis in aqueous environments and has poor spatial resolution. To overcome these challenges, we are using a new method termed Optical Photothermal Infrared (O-PTIR) spectroscopy to detect local absorption to establish IR tumor markers and classification models. We report on experimental outcomes using machine learning and IR spectroscopy for the classification of cells and the identification of markers for cancer and migratory properties, comparing conventional FTIR microscopy to a custom O-PTIR instrument.

Authors

Institutions

Publication Details

Journal
ChemRxiv
Published
2025-08-30
DOI
https://doi.org/10.26434/chemrxiv-2025-k5n4v
Primary Topic
Spectroscopy Techniques in Biomedical and Chemical Research
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Identifying Spectral Biomarkers for Migratory Potential in Cancer Cells Using FTIR and O-PTIR Spectroscopy

Marjaana Parikainen, Georg Ramer, Emil Holub, Cecilia Sahlgren et al.
5 links
ChemRxiv
Spectroscopy Techniques in Biomedical and Chemical Research
article

Identifying Spectral Biomarkers for Migratory Potential in Cancer Cells Using FTIR and O-PTIR Spectroscopy

Marjaana Parikainen, Georg Ramer, Emil Holub, Cecilia Sahlgren, Bernhard Lendl, Nikolaus Hondl, Kai‐Lan Lin
article en

Abstract

Cancer is a leading cause of death worldwide, and incidence and mortality are growing rapidly. Metastasis, the occurrence of cancer at sites different from the primary tumor, can affect multiple organs, compromising their function or altering their metabolism, and eventually leads to death. In fact, metastasis is the main cause of death in the majority of cancer patients. Considering the severe implications of cancer on patient survival and quality of life, the early identification of metastases is pivotal in the effective treatment of cancer. Since routine diagnostic practice relies on a time-consuming staining process and the use of antibodies to detect selected molecular markers, it is limited by a lack of real-time data and the availability of molecular information. Against this background, techniques based on rapid chemical analysis to identify migratory properties are highly desirable. Fourier-Transform Infrared (FTIR) spectroscopy has a long history in the label-free identification of infrared marker bands for cancer detection. However, it requires extensive post-processing of the acquired spectra, is not suitable for analysis in aqueous environments and has poor spatial resolution. To overcome these challenges, we are using a new method termed Optical Photothermal Infrared (O-PTIR) spectroscopy to detect local absorption to establish IR tumor markers and classification models. We report on experimental outcomes using machine learning and IR spectroscopy for the classification of cells and the identification of markers for cancer and migratory properties, comparing conventional FTIR microscopy to a custom O-PTIR instrument.

ChemRxiv
Research Council of Finland (FI), Åbo Akademi University (FI), TU Wien (AT), Turku Centre for Computer Science (FI), Association of British Orchestras (GB), Eindhoven University of Technology (NL)
Christian Doppler Forschungsgesellschaft, Horizon 2020
Openalex Percentile: Top 84%
Spectroscopy Techniques in Biomedical and Chemical Research
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.