Phaeobacter cretensis sp. nov. and Phaeobacter bryozoorum sp. nov., isolated from seawater from off the coast of Crete and from Roskilde Fjord in Denmark

Two Gram-negative, motile, rod-shaped bacteria, designated as C3_T13_0<sup>T</sup> and A36a-5a<sup>T</sup>, were isolated from marine environments collected off the coast of Crete, Greece, and from a biofilm in Jyllinge Harbor in Roskilde Fjord, Denmark, respectively. 16S rRNA gene phylogeny revealed that the two strains belong to the genus <i>Phaeobacter</i>. The major cellular fatty acids (>5%) were C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> for strain A36a-5a<sup>T</sup> and C<sub>18 : 1</sub> <i> ω</i>7<i>c</i>, C<sub>18 : 2</sub> <i> ω</i>7,13 and C<sub>16 : 0</sub> for strain C3_T13_0<sup>T</sup>. The major respiratory quinone was ubiquinone-10, and the predominant polar lipids were phosphatidylcholine, phosphatidylglycerol, and phosphatidylethanolamine for both strains. C3_T13_0<sup>T</sup> and A36a-5a<sup>T</sup> both produce the antimicrobial compound tropodithietic acid. The C3_T13_0<sup>T</sup> strain grows at temperatures between 8 and 37 °C with an optimum of 25 °C, whereas A36a-5a<sup>T</sup> grows between 5 and 37 °C with an optimum of 30 °C. The salinity range for growth was 2-9 % NaCl (w/v) for C3_T13_0<sup>T</sup> with an optimum of 3-4% and 0-10% NaCl (w/v) for A36a-5a<sup>T</sup> with an optimum of 2-6%. The genomes of the two strains shared an average nucleotide identity (ANI) of 84% and had lower than 87% ANI when compared with genomes of <i>Phaeobacter</i> spp. type strains. The genome of C3_T13_0<sup>T</sup> was 4,432,895 bp with a G+C content of 55.96 mol%, and the genome of A36a-5a<sup>T</sup> was 4,050,005 bp with a G+C content of 61.37 mol%. Based on the phylogenetic and phenotypic analyses presented here, the two isolates C3_T13_0<sup>T</sup> (=DSM 118664<sup>T</sup>=LMG 33738<sup>T</sup>) and A36a-5a<sup>T</sup> (=DSM 118663<sup>T</sup>=LMG 33737<sup>T</sup>) are considered to represent two novel species belonging to the genus <i>Phaeobacter</i>, for which the names <i>Phaeobacter cretensis</i> sp. nov. and <i>Phaeobacter bryozoorum</i> sp. nov. are proposed, respectively.

Authors

Institutions

Publication Details

Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2025-08-29
DOI
https://doi.org/10.1099/ijsem.0.006902
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Phaeobacter cretensis sp. nov. and Phaeobacter bryozoorum sp. nov., isolated from seawater from off the coast of Crete and from Roskilde Fjord in Denmark

Jette Melchiorsen, Sarah Kirstein, Paul J. Kempen, Carl H. Hobbs et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Phaeobacter cretensis sp. nov. and Phaeobacter bryozoorum sp. nov., isolated from seawater from off the coast of Crete and from Roskilde Fjord in Denmark

Jette Melchiorsen, Sarah Kirstein, Paul J. Kempen, Carl H. Hobbs, Lone Gram, Line Roager, Mikkel Bentzon‐Tilia, P. Svendsen, Yuyan Liu, M Sander, Philip Staffeldt
article en

Abstract

Two Gram-negative, motile, rod-shaped bacteria, designated as C3_T13_0<sup>T</sup> and A36a-5a<sup>T</sup>, were isolated from marine environments collected off the coast of Crete, Greece, and from a biofilm in Jyllinge Harbor in Roskilde Fjord, Denmark, respectively. 16S rRNA gene phylogeny revealed that the two strains belong to the genus <i>Phaeobacter</i>. The major cellular fatty acids (>5%) were C<sub>18 : 1</sub> <i> ω</i>7<i>c</i> for strain A36a-5a<sup>T</sup> and C<sub>18 : 1</sub> <i> ω</i>7<i>c</i>, C<sub>18 : 2</sub> <i> ω</i>7,13 and C<sub>16 : 0</sub> for strain C3_T13_0<sup>T</sup>. The major respiratory quinone was ubiquinone-10, and the predominant polar lipids were phosphatidylcholine, phosphatidylglycerol, and phosphatidylethanolamine for both strains. C3_T13_0<sup>T</sup> and A36a-5a<sup>T</sup> both produce the antimicrobial compound tropodithietic acid. The C3_T13_0<sup>T</sup> strain grows at temperatures between 8 and 37 °C with an optimum of 25 °C, whereas A36a-5a<sup>T</sup> grows between 5 and 37 °C with an optimum of 30 °C. The salinity range for growth was 2-9 % NaCl (w/v) for C3_T13_0<sup>T</sup> with an optimum of 3-4% and 0-10% NaCl (w/v) for A36a-5a<sup>T</sup> with an optimum of 2-6%. The genomes of the two strains shared an average nucleotide identity (ANI) of 84% and had lower than 87% ANI when compared with genomes of <i>Phaeobacter</i> spp. type strains. The genome of C3_T13_0<sup>T</sup> was 4,432,895 bp with a G+C content of 55.96 mol%, and the genome of A36a-5a<sup>T</sup> was 4,050,005 bp with a G+C content of 61.37 mol%. Based on the phylogenetic and phenotypic analyses presented here, the two isolates C3_T13_0<sup>T</sup> (=DSM 118664<sup>T</sup>=LMG 33738<sup>T</sup>) and A36a-5a<sup>T</sup> (=DSM 118663<sup>T</sup>=LMG 33737<sup>T</sup>) are considered to represent two novel species belonging to the genus <i>Phaeobacter</i>, for which the names <i>Phaeobacter cretensis</i> sp. nov. and <i>Phaeobacter bryozoorum</i> sp. nov. are proposed, respectively.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 75(8)
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures (DE), Technical University of Denmark (DK)
Novo Nordisk Fonden, H2020 Research Infrastructures
Openalex Percentile: Top 80%
Genomics and Phylogenetic Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.