VENUSpy: A Chemical Dynamics Simulation Program in the Era of Machine Learning and Exascale Computing

The field of chemical reaction dynamics has evolved considerably since its inception, driven by advances in computational power and theoretical methodologies. While ab initio molecular dynamics (AIMD) simulations offer high accuracy by computing forces directly from electronic structure theory, its high computational cost limits its applicability to small systems and short time scales. Machine learning (ML) potentials and exascale computing offer new ways of developing potential energy surfaces (PESs) for chemical reaction dynamics simulations of longer times scales and larger systems. In this work, we introduce VENUSpy, a Python-based reimplementation and extension of the classical VENUS code, designed to interface with existing ML-based potentials and the exascale-ready quantum chemistry package NWChemEx. VENUSpy preserves the large library of initial sampling and classical trajectory propagation of the original, FORTRAN-based VENUS, while expanding its versatility through integration with modern Python tools. This modular framework enables ML/ab initio hybrid dynamics simulations, which offers distinct advantages to AIMD simulations and MLMD simulations, as well as fosters rapid development of new methodologies for studying complex reactive systems. The code is released open-source at Github at github.com/kaka-zuumi/VENUSpy and can be installed with pip under the package name venuspython.

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Publication Details

Journal
ChemRxiv
Published
2025-08-30
DOI
https://doi.org/10.26434/chemrxiv-2025-ch56h
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
0.00

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article

VENUSpy: A Chemical Dynamics Simulation Program in the Era of Machine Learning and Exascale Computing

Rui Sun, Jonathan M. Waldrop, Kazuumi Fujioka, Yuheng Luo et al.
ChemRxiv
Scientific Computing and Data Management
article

VENUSpy: A Chemical Dynamics Simulation Program in the Era of Machine Learning and Exascale Computing

Rui Sun, Jonathan M. Waldrop, Kazuumi Fujioka, Yuheng Luo, Ryan M. Richard, Theresa L. Windus
article en

Abstract

The field of chemical reaction dynamics has evolved considerably since its inception, driven by advances in computational power and theoretical methodologies. While ab initio molecular dynamics (AIMD) simulations offer high accuracy by computing forces directly from electronic structure theory, its high computational cost limits its applicability to small systems and short time scales. Machine learning (ML) potentials and exascale computing offer new ways of developing potential energy surfaces (PESs) for chemical reaction dynamics simulations of longer times scales and larger systems. In this work, we introduce VENUSpy, a Python-based reimplementation and extension of the classical VENUS code, designed to interface with existing ML-based potentials and the exascale-ready quantum chemistry package NWChemEx. VENUSpy preserves the large library of initial sampling and classical trajectory propagation of the original, FORTRAN-based VENUS, while expanding its versatility through integration with modern Python tools. This modular framework enables ML/ab initio hybrid dynamics simulations, which offers distinct advantages to AIMD simulations and MLMD simulations, as well as fosters rapid development of new methodologies for studying complex reactive systems. The code is released open-source at Github at github.com/kaka-zuumi/VENUSpy and can be installed with pip under the package name venuspython.

ChemRxiv
University of Hawaii System (US), Iowa State University (US), Ames National Laboratory (US)
National Science Foundation, U.S. Department of Energy, University of Hawai'i, Office of Science, Basic Energy Sciences, Chemical Sciences, Geosciences, and Biosciences Division, Air Force Office of Scientific Research
Openalex Percentile: Top 77%
Scientific Computing and Data Management
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