Characterization of the thermophilic xylanase <scp>Fsa02490Xyn</scp> from the hyperthermophile <i>Fervidibacter sacchari</i> belonging to glycoside hydrolase family 10

Fervidibacter sacchari is an aerobic hyperthermophile belonging to the phylum Armatimonadota that degrades a variety of polysaccharides. Its genome encodes 117 enzymes with one or more annotated glycoside hydrolase (GH) domain, but the roles of these putative GHs in polysaccharide catabolism are poorly defined. Here, we describe one F. sacchari enzyme encoding a GH10 domain, Fsa02490Xyn, that was previously shown to be active on Miscanthus, oat β-glucan, and beech-wood xylan, with optimal activity at 90-100 °C. We show that Fsa02490Xyn is also active on birch-wood xylan and gellan gum. The pH range on beech-wood xylan was 4.5 to 9.5 (pH<sub>opt</sub> 7.0-8.0). Fsa024940Xyn had a K<sub>m</sub> of 2.375 mm, V<sub>max</sub> of 1250 μm·min<sup>-1</sup>, and k<sub>cat</sub>/K<sub>m</sub> of 1.259 × 10<sup>4</sup> s<sup>-1</sup>·m<sup>-1</sup> when using a para-nitrophenyl-𝛽-xylobioside assay. A phylogenetic analysis of GH10 family enzymes revealed a large clade of enzymes from diverse members of the class Fervidibacteria, including Fsa02490Xyn and a second enzyme from F. sacchari, with apparent horizontal gene transfer within Fervidibacteria and between Fervidibacteria and thermophilic Bacillota. This study establishes Fsa02490Xyn as a hyperthermophilic GH10 enzyme with endo-β-1,4-xylanase activity and identifies a large clade of homologous GH10 enzymes within the class Fervidibacteria. Impact statement The depolymerization of xylan at high temperatures is important because this process limits the degradation of polysaccharides in nature and the synthesis of biofuels from plant wastes. Our study is also important because F. sacchari is one of only a few cultivated members of the Armatimonadota, which are polysaccharide-degradation specialists.

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Journal
FEBS Open Bio
Published
2025-08-29
DOI
https://doi.org/10.1002/2211-5463.70072
Primary Topic
Enzyme Production and Characterization
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article
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article

Characterization of the thermophilic xylanase Fsa02490Xyn from the hyperthermophile Fervidibacter sacchari belonging to glycoside hydrolase family 10

Miranda Harmon‐Smith, Ritesh Mewalal, Jan‐Fang Cheng, Brian P. Hedlund et al.
FEBS Open Bio
Enzyme Production and Characterization
article

Characterization of the thermophilic xylanase Fsa02490Xyn from the hyperthermophile Fervidibacter sacchari belonging to glycoside hydrolase family 10

Miranda Harmon‐Smith, Ritesh Mewalal, Jan‐Fang Cheng, Brian P. Hedlund, Matthias Hess, Ian K. Blaby, Nancy O. Nou, Marike Palmer, Jonathan K. Covington, Nicole Torosian, Allison M. Cook
article en

Abstract

Fervidibacter sacchari is an aerobic hyperthermophile belonging to the phylum Armatimonadota that degrades a variety of polysaccharides. Its genome encodes 117 enzymes with one or more annotated glycoside hydrolase (GH) domain, but the roles of these putative GHs in polysaccharide catabolism are poorly defined. Here, we describe one F. sacchari enzyme encoding a GH10 domain, Fsa02490Xyn, that was previously shown to be active on Miscanthus, oat β-glucan, and beech-wood xylan, with optimal activity at 90-100 °C. We show that Fsa02490Xyn is also active on birch-wood xylan and gellan gum. The pH range on beech-wood xylan was 4.5 to 9.5 (pH<sub>opt</sub> 7.0-8.0). Fsa024940Xyn had a K<sub>m</sub> of 2.375 mm, V<sub>max</sub> of 1250 μm·min<sup>-1</sup>, and k<sub>cat</sub>/K<sub>m</sub> of 1.259 × 10<sup>4</sup> s<sup>-1</sup>·m<sup>-1</sup> when using a para-nitrophenyl-𝛽-xylobioside assay. A phylogenetic analysis of GH10 family enzymes revealed a large clade of enzymes from diverse members of the class Fervidibacteria, including Fsa02490Xyn and a second enzyme from F. sacchari, with apparent horizontal gene transfer within Fervidibacteria and between Fervidibacteria and thermophilic Bacillota. This study establishes Fsa02490Xyn as a hyperthermophilic GH10 enzyme with endo-β-1,4-xylanase activity and identifies a large clade of homologous GH10 enzymes within the class Fervidibacteria. Impact statement The depolymerization of xylan at high temperatures is important because this process limits the degradation of polysaccharides in nature and the synthesis of biofuels from plant wastes. Our study is also important because F. sacchari is one of only a few cultivated members of the Armatimonadota, which are polysaccharide-degradation specialists.

FEBS Open BioVol. 15(10)
University of Nevada, Las Vegas (US), Lawrence Berkeley National Laboratory (US), Joint Genome Institute (US), University of Manitoba (CA), University of California, Davis (US)
National Science Foundation, National Aeronautics and Space Administration, Nuclear Safety and Security Commission
Openalex Percentile: Top 75%
Enzyme Production and Characterization
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