Characterization of the thermophilic xylanase <scp>Fsa02490Xyn</scp> from the hyperthermophile <i>Fervidibacter sacchari</i> belonging to glycoside hydrolase family 10
Fervidibacter sacchari is an aerobic hyperthermophile belonging to the phylum Armatimonadota that degrades a variety of polysaccharides. Its genome encodes 117 enzymes with one or more annotated glycoside hydrolase (GH) domain, but the roles of these putative GHs in polysaccharide catabolism are poorly defined. Here, we describe one F. sacchari enzyme encoding a GH10 domain, Fsa02490Xyn, that was previously shown to be active on Miscanthus, oat β-glucan, and beech-wood xylan, with optimal activity at 90-100 °C. We show that Fsa02490Xyn is also active on birch-wood xylan and gellan gum. The pH range on beech-wood xylan was 4.5 to 9.5 (pH<sub>opt</sub> 7.0-8.0). Fsa024940Xyn had a K<sub>m</sub> of 2.375 mm, V<sub>max</sub> of 1250 μm·min<sup>-1</sup>, and k<sub>cat</sub>/K<sub>m</sub> of 1.259 × 10<sup>4</sup> s<sup>-1</sup>·m<sup>-1</sup> when using a para-nitrophenyl-𝛽-xylobioside assay. A phylogenetic analysis of GH10 family enzymes revealed a large clade of enzymes from diverse members of the class Fervidibacteria, including Fsa02490Xyn and a second enzyme from F. sacchari, with apparent horizontal gene transfer within Fervidibacteria and between Fervidibacteria and thermophilic Bacillota. This study establishes Fsa02490Xyn as a hyperthermophilic GH10 enzyme with endo-β-1,4-xylanase activity and identifies a large clade of homologous GH10 enzymes within the class Fervidibacteria. Impact statement The depolymerization of xylan at high temperatures is important because this process limits the degradation of polysaccharides in nature and the synthesis of biofuels from plant wastes. Our study is also important because F. sacchari is one of only a few cultivated members of the Armatimonadota, which are polysaccharide-degradation specialists.
Authors
- Miranda Harmon‐Smith (ORCID: https://orcid.org/0000-0002-3980-1820)
- Ritesh Mewalal (ORCID: https://orcid.org/0000-0002-0153-2434)
- Jan‐Fang Cheng (ORCID: https://orcid.org/0000-0001-7315-7613)
- Brian P. Hedlund (ORCID: https://orcid.org/0000-0001-8530-0448)
- Matthias Hess (ORCID: https://orcid.org/0000-0003-0321-0380)
- Ian K. Blaby (ORCID: https://orcid.org/0000-0002-1631-3154)
- Nancy O. Nou (ORCID: https://orcid.org/0000-0003-4758-8131)
- Marike Palmer (ORCID: https://orcid.org/0000-0001-8395-8465)
- Jonathan K. Covington (ORCID: https://orcid.org/0000-0002-8377-6722)
- Nicole Torosian
- Allison M. Cook
Institutions
- University of Nevada, Las Vegas (US)
- Lawrence Berkeley National Laboratory (US)
- Joint Genome Institute (US)
- University of Manitoba (CA)
- University of California, Davis (US)
Publication Details
- Journal
- FEBS Open Bio
- Published
- 2025-08-29
- DOI
- https://doi.org/10.1002/2211-5463.70072
- Primary Topic
- Enzyme Production and Characterization
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Science Foundation
- National Aeronautics and Space Administration
- Nuclear Safety and Security Commission