Unique plastisphere viromes with habitat-dependent potential for modulating global methane cycle

Plastispheres, novel niches in the Anthropocene, harbor microbial communities with unique functional signatures. As the most abundant biological entity on Earth, viruses are key regulators of microbial community composition and metabolism. However, little is known about viral communities and their functions in the plastisphere. Here, we investigate the composition and functional profile of plastisphere viral communities through microcosm experiments combined with global plastisphere metagenomics data. We find that the plastisphere recruits a distinct viral community with 86.9% novel viral operational taxonomic units compared to control substrates. The plastisphere viral community modulates host methane metabolism through auxiliary metabolic genes and distinctive interactions with hosts. These auxiliary metabolic genes for methane cycling are prevalent in global plastisphere viral communities. Notably, the plastisphere microbiome adopts the life history strategy of copiotrophs in the nutrient-poor water environment, making the water plastisphere a potential hot spot for methane emission compared to the soil plastisphere. Our phage transplantation experiments reveal that lysogenic viruses significantly contribute to enhancing the methanogenic capacity of microorganisms and promoting methane emission of the water plastisphere. Overall, we decipher the role of viruses in the plastisphere and reinforce the necessity of incorporating viral contributions when assessing the effects of plastisphere communities on global biogeochemical cycles.

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Publication Details

Journal
Nature Communications
Published
2025-08-29
DOI
https://doi.org/10.1038/s41467-025-63215-6
Citations
7
Primary Topic
Bacteriophages and microbial interactions
Type
article
Field-Weighted Citation Impact
12.01

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article

Unique plastisphere viromes with habitat-dependent potential for modulating global methane cycle

Mingming Sun, Matthias C. Rillig, Dong Zhu, Lu Wang et al.
7 citations
Nature Communications
Bacteriophages and microbial interactions
12.01
article

Unique plastisphere viromes with habitat-dependent potential for modulating global methane cycle

Mingming Sun, Matthias C. Rillig, Dong Zhu, Lu Wang, Da Lin, Yong‐Guan Zhu, Mao Ye, Shuyue Liu, Tian-Lun Zhang, Xuepeng Chen
article en
7 citations

Abstract

Plastispheres, novel niches in the Anthropocene, harbor microbial communities with unique functional signatures. As the most abundant biological entity on Earth, viruses are key regulators of microbial community composition and metabolism. However, little is known about viral communities and their functions in the plastisphere. Here, we investigate the composition and functional profile of plastisphere viral communities through microcosm experiments combined with global plastisphere metagenomics data. We find that the plastisphere recruits a distinct viral community with 86.9% novel viral operational taxonomic units compared to control substrates. The plastisphere viral community modulates host methane metabolism through auxiliary metabolic genes and distinctive interactions with hosts. These auxiliary metabolic genes for methane cycling are prevalent in global plastisphere viral communities. Notably, the plastisphere microbiome adopts the life history strategy of copiotrophs in the nutrient-poor water environment, making the water plastisphere a potential hot spot for methane emission compared to the soil plastisphere. Our phage transplantation experiments reveal that lysogenic viruses significantly contribute to enhancing the methanogenic capacity of microorganisms and promoting methane emission of the water plastisphere. Overall, we decipher the role of viruses in the plastisphere and reinforce the necessity of incorporating viral contributions when assessing the effects of plastisphere communities on global biogeochemical cycles.

Nature CommunicationsVol. 16(1)
Nanjing Agricultural University (CN), University of Science and Technology of China (CN), Chinese Academy of Sciences (CN), Berlin Brandenburg Institute of Advanced Biodiversity Research (DE), Institute of Urban Environment (CN), Research Center for Eco-Environmental Sciences (CN), University of Chinese Academy of Sciences (CN), Ningbo Institute of Industrial Technology (CN), Institute of Soil Science (CN), Freie Universität Berlin (DE)
National Natural Science Foundation of China
Openalex Percentile: Top 1%
Bacteriophages and microbial interactions
12.01
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