An interpretable XGBoost model for risk prediction of progression from sepsis-associated acute kidney injury to chronic kidney disease

To develop an interpretable machine learning (ML) model for predicting the risk of progression from sepsis-associated acute kidney injury (SA-AKI) to chronic kidney disease (CKD) guiding early stratified interventions. Using data from 1,315 SA-AKI patients [Medical Information Mart for Intensive Care IV (MIMIC-IV) database], we constructed an extreme gradient boosting (XGBoost) model with SHapley Additive exPlanations (SHAP) interpretability. Performance was evaluated by discrimination, calibration, and clinical utility [decision curve analysis (DCA)]. CKD incidence was 36.7% (median onset: 7.6 months). The XGBoost model achieved: superior discrimination [training area under the curve (AUC) 0.920; validation AUC 0.951 versus Sequential Organ Failure Assessment (SOFA) renal 0.616 and logistic regression (LR) 0.822], robust calibration, and clinical applicability. SHAP identified actionable thresholds (age >65, maximum serum creatinine >0.9 mg/dl) for early intervention. Feature stability analysis revealed a stage-dependent coefficient drift for serum creatinine (Δβ = +0.84), reflecting dynamic pathophysiology. Crucially, the model provides clinically interpretable outputs without requiring SHAP expertise, enabling seamless integration into workflows. Our model delivers personalized, interpretable CKD risk alerts for SA-AKI patients, empowering clinicians to stratify follow-up care. External validation is warranted to confirm generalizability.

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Publication Details

Journal
Informatics in Medicine Unlocked
Published
2025-01-01
DOI
https://doi.org/10.1016/j.imu.2025.101685
Primary Topic
Acute Kidney Injury Research
Type
article
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article

An interpretable XGBoost model for risk prediction of progression from sepsis-associated acute kidney injury to chronic kidney disease

Jingqi Gao, Yingying Lin, Xiuling Shang, Peiling Chen et al.
Informatics in Medicine Unlocked
Acute Kidney Injury Research
article

An interpretable XGBoost model for risk prediction of progression from sepsis-associated acute kidney injury to chronic kidney disease

Jingqi Gao, Yingying Lin, Xiuling Shang, Peiling Chen, Linfang Chen, Min Li, Yixiao Hong
article en

Abstract

To develop an interpretable machine learning (ML) model for predicting the risk of progression from sepsis-associated acute kidney injury (SA-AKI) to chronic kidney disease (CKD) guiding early stratified interventions. Using data from 1,315 SA-AKI patients [Medical Information Mart for Intensive Care IV (MIMIC-IV) database], we constructed an extreme gradient boosting (XGBoost) model with SHapley Additive exPlanations (SHAP) interpretability. Performance was evaluated by discrimination, calibration, and clinical utility [decision curve analysis (DCA)]. CKD incidence was 36.7% (median onset: 7.6 months). The XGBoost model achieved: superior discrimination [training area under the curve (AUC) 0.920; validation AUC 0.951 versus Sequential Organ Failure Assessment (SOFA) renal 0.616 and logistic regression (LR) 0.822], robust calibration, and clinical applicability. SHAP identified actionable thresholds (age >65, maximum serum creatinine >0.9 mg/dl) for early intervention. Feature stability analysis revealed a stage-dependent coefficient drift for serum creatinine (Δβ = +0.84), reflecting dynamic pathophysiology. Crucially, the model provides clinically interpretable outputs without requiring SHAP expertise, enabling seamless integration into workflows. Our model delivers personalized, interpretable CKD risk alerts for SA-AKI patients, empowering clinicians to stratify follow-up care. External validation is warranted to confirm generalizability.

Informatics in Medicine UnlockedVol. 58
Fujian Medical University (CN), Fujian Provincial Hospital (CN), Xiamen Medical College
Good health and well-being
Openalex Percentile: Top 76%
Acute Kidney Injury Research
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An interpretable XGBoost model for risk prediction of progression from sepsis-associated acute kidney injury to chronic kidney disease — Jingqi Gao, Yingying Lin, et al. · Informatics in Medicine Unlocked (2025) | TGRS Research Map | TGRS