H2B.W2, a spermatocyte-specific histone variant, disrupts nucleosome stability, and reduces chromatin compaction

Spermatogenesis is a highly regulated process that requires precise chromatin remodeling, which includes the incorporation of testis-specific histone variants. While several of these variants have been characterized, the role of H2B.W2, a member of the H2BW family, remains largely unclear. Here, we showed that H2B.W2 expression occurs mainly in spermatocytes, slightly later than its paralog H2B.W1. Cryo-electron microscopy analysis of H2B.W2-containing nucleosomes reveals a more relaxed conformation compared to canonical nucleosomes caused by weakened interactions between the outer DNA turn and the histone core. We pinpointed the N-terminal tail and α2 helix of H2B.W2 as critical regions for nucleosome destabilization. Furthermore, we identify G73 within the L1 loop as a key residue involved in disrupting higher-order chromatin structure. Our findings suggest that H2B.W2-mediated nucleosome and chromatin destabilization may play a role in regulating gene expression during spermatogenesis, with potential implications for sperm development and function.

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Publication Details

Journal
Nucleic Acids Research
Published
2025-08-27
DOI
https://doi.org/10.1093/nar/gkaf825
Primary Topic
Genomics and Chromatin Dynamics
Type
article
Field-Weighted Citation Impact
0.00

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article

H2B.W2, a spermatocyte-specific histone variant, disrupts nucleosome stability, and reduces chromatin compaction

Thi Thuy Nguyen, Xingpeng Bai, Toyotaka Ishibashi, Mingxi Deng et al.
Nucleic Acids Research
Genomics and Chromatin Dynamics
article

H2B.W2, a spermatocyte-specific histone variant, disrupts nucleosome stability, and reduces chromatin compaction

Thi Thuy Nguyen, Xingpeng Bai, Toyotaka Ishibashi, Mingxi Deng, Matthew Yu Hin Pang, Yuanliang Zhai, Dongbo Ding, Yan Yan, Yingyi Zhang, Ting Jin, Zhichun Xu, Yue Liu
article en

Abstract

Spermatogenesis is a highly regulated process that requires precise chromatin remodeling, which includes the incorporation of testis-specific histone variants. While several of these variants have been characterized, the role of H2B.W2, a member of the H2BW family, remains largely unclear. Here, we showed that H2B.W2 expression occurs mainly in spermatocytes, slightly later than its paralog H2B.W1. Cryo-electron microscopy analysis of H2B.W2-containing nucleosomes reveals a more relaxed conformation compared to canonical nucleosomes caused by weakened interactions between the outer DNA turn and the histone core. We pinpointed the N-terminal tail and α2 helix of H2B.W2 as critical regions for nucleosome destabilization. Furthermore, we identify G73 within the L1 loop as a key residue involved in disrupting higher-order chromatin structure. Our findings suggest that H2B.W2-mediated nucleosome and chromatin destabilization may play a role in regulating gene expression during spermatogenesis, with potential implications for sperm development and function.

Nucleic Acids ResearchVol. 53(16)
Hong Kong University of Science and Technology (HK), Hong Kong Science and Technology Parks Corporation (HK), Institute of Biophysics (CN), Peking University Shenzhen Hospital (CN), Guangzhou HKUST Fok Ying Tung Research Institute (CN), University of Hong Kong (HK)
National Natural Science Foundation of China, Science, Technology and Innovation Commission of Shenzhen Municipality
Openalex Percentile: Top 80%
Genomics and Chromatin Dynamics
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