Bioinformatic workflow for Nanopore metabarcoding analysis v1
This protocol is aimed to help scientists process an Oxford Nanopore sequencing run from a 16S meta-barcoding experiment to produce a rarefaction curve, an alpha diversity analysis between samples and a stacked bar plot of the most represented taxons.
Authors
- Jérôme Verleyen (ORCID: https://orcid.org/0000-0002-7484-8739)
- Alejandra Escobar‐Zepeda (ORCID: https://orcid.org/0000-0003-3549-9115)
- Juan Manuel Zurita-Artaloitia
- Alejandro Sánchez (ORCID: https://orcid.org/0000-0002-9054-7346)
- Liliana Pardo‐López (ORCID: https://orcid.org/0000-0002-8927-1733)
- Ilse Patricia Salinas Peralta
Institutions
- Biofuel Research Team (IR)
Publication Details
- Published
- 2024-10-17
- DOI
- https://doi.org/10.17504/protocols.io.eq2lywmxqvx9/v1
- Primary Topic
- Environmental DNA in Biodiversity Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Consejo Nacional de Ciencia y Tecnología
- Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México