Community detection for directed networks revisited using bimodularity

Community structure is a key feature omnipresent in real-world network data. Plethora of methods have been proposed to reveal subsets of densely interconnected nodes using criteria such as the modularity index. These approaches have been successful for undirected graphs but directed edge information has not yet been dealt with in a satisfactory way. Here, we revisit the concept of directed communities as a mapping between sending and receiving communities. This translates into a definition that we term bimodularity. Using convex relaxation, bimodularity can be optimized with the singular value decomposition of the directed modularity matrix. Subsequently, we propose an edge-based clustering approach to reveal the directed communities including their mappings. The feasibility of the framework is illustrated on a synthetic model and further applied to the neuronal wiring diagram of the <i>Caenorhabditis elegans</i>, for which it yields meaningful feedforward loops of the head and body motion systems. This framework sets the ground for the understanding and detection of community structures in directed networks.

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Publication Details

Journal
Proceedings of the National Academy of Sciences
Published
2025-08-25
DOI
https://doi.org/10.1073/pnas.2500571122
Citations
2
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
1.61

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article

Community detection for directed networks revisited using bimodularity

Alexandre Cionca, Dimitri Van De Ville, Chun Hei Michael Chan
2 citations
Proceedings of the National Academy of Sciences
Gene Regulatory Network Analysis
1.61
article

Community detection for directed networks revisited using bimodularity

Alexandre Cionca, Dimitri Van De Ville, Chun Hei Michael Chan
article en
2 citations

Abstract

Community structure is a key feature omnipresent in real-world network data. Plethora of methods have been proposed to reveal subsets of densely interconnected nodes using criteria such as the modularity index. These approaches have been successful for undirected graphs but directed edge information has not yet been dealt with in a satisfactory way. Here, we revisit the concept of directed communities as a mapping between sending and receiving communities. This translates into a definition that we term bimodularity. Using convex relaxation, bimodularity can be optimized with the singular value decomposition of the directed modularity matrix. Subsequently, we propose an edge-based clustering approach to reveal the directed communities including their mappings. The feasibility of the framework is illustrated on a synthetic model and further applied to the neuronal wiring diagram of the <i>Caenorhabditis elegans</i>, for which it yields meaningful feedforward loops of the head and body motion systems. This framework sets the ground for the understanding and detection of community structures in directed networks.

Proceedings of the National Academy of SciencesVol. 122(35)
University of Geneva (CH), École Polytechnique Fédérale de Lausanne (CH)
Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
Openalex Percentile: Top 15%
Gene Regulatory Network Analysis
1.61
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Community detection for directed networks revisited using bimodularity — Alexandre Cionca, Dimitri Van De Ville, et al. · Proceedings of the National Academy of Sciences (2025) | TGRS Research Map | TGRS