Matching the Probability Distribution On-the-Fly: OPES-Based Dual-Level Free Energy Calculation

The free energy profile (FE Profile) is essential for understanding chemical processes in complex systems. However, achieving sufficient sampling with an accurate potential in the FE profile calculations for chemical reactions in complex environments is often computationally prohibitive. The reference potential method (RPM) addresses this challenge by sampling configurations on a low-level potential energy surface (PES) and then computing the FE profile at a high-level one using thermodynamic perturbation correction, significantly reducing computational costs. Nevertheless, when the low-level Hamiltonian exhibits poor similarity to the high-level one, the FE profile often converges slowly to the accurate result due to insufficient sampling of critical high-level Hamiltonian configurations. In this work, we propose an approach denoted as dual-level OPES, which combines the ideas of the on-the-fly probability enhanced sampling method (OPES) and RPM. In this method, an OPES bias potential <i>V</i><sub>opes</sub> along the reaction coordinate accelerates barrier crossing, while the <i>V</i><sub>corr</sub> probability distribution correction potential gradually improves the probability distribution overlap between the low-level and high-level Hamiltonians in a predefined orthogonal space. Our method has been validated on both a mathematical model system and a realistic case (intramolecular proton transfer of glycine in an aqueous solution). The results show that the dual-level OPES method improves the overlap between the sample distribution in the selected orthogonal space and the high-level Hamiltonian. In the model system, we observe accelerated FE profile convergence compared to the direct application of RPM. For the intramolecular proton transfer case, the dual-level OPES method not only significantly reduces the FE profile error but also achieves a several tens of times speedup over direct high-level simulations.

Authors

Institutions

Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-08-25
DOI
https://doi.org/10.1021/acs.jctc.5c01128
Primary Topic
Spectroscopy and Quantum Chemical Studies
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Matching the Probability Distribution On-the-Fly: OPES-Based Dual-Level Free Energy Calculation

Shengheng Yan, Binju Wang, Shuming Cheng
Journal of Chemical Theory and Computation
Spectroscopy and Quantum Chemical Studies
article

Matching the Probability Distribution On-the-Fly: OPES-Based Dual-Level Free Energy Calculation

Shengheng Yan, Binju Wang, Shuming Cheng
article en

Abstract

The free energy profile (FE Profile) is essential for understanding chemical processes in complex systems. However, achieving sufficient sampling with an accurate potential in the FE profile calculations for chemical reactions in complex environments is often computationally prohibitive. The reference potential method (RPM) addresses this challenge by sampling configurations on a low-level potential energy surface (PES) and then computing the FE profile at a high-level one using thermodynamic perturbation correction, significantly reducing computational costs. Nevertheless, when the low-level Hamiltonian exhibits poor similarity to the high-level one, the FE profile often converges slowly to the accurate result due to insufficient sampling of critical high-level Hamiltonian configurations. In this work, we propose an approach denoted as dual-level OPES, which combines the ideas of the on-the-fly probability enhanced sampling method (OPES) and RPM. In this method, an OPES bias potential <i>V</i><sub>opes</sub> along the reaction coordinate accelerates barrier crossing, while the <i>V</i><sub>corr</sub> probability distribution correction potential gradually improves the probability distribution overlap between the low-level and high-level Hamiltonians in a predefined orthogonal space. Our method has been validated on both a mathematical model system and a realistic case (intramolecular proton transfer of glycine in an aqueous solution). The results show that the dual-level OPES method improves the overlap between the sample distribution in the selected orthogonal space and the high-level Hamiltonian. In the model system, we observe accelerated FE profile convergence compared to the direct application of RPM. For the intramolecular proton transfer case, the dual-level OPES method not only significantly reduces the FE profile error but also achieves a several tens of times speedup over direct high-level simulations.

Journal of Chemical Theory and ComputationVol. 21(17)
Solid State Physics Laboratory (IN), Xiamen University (CN)
National Natural Science Foundation of China, Fundamental Research Funds for the Central Universities
Affordable and clean energy
Openalex Percentile: Top 83%
Spectroscopy and Quantum Chemical Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.