OpenStats: How to combine statistics and research data management (RDM) to leverage efficient scientific data analysis by guided statistics

We developed OpenStats, a user-friendly web application that brings the power of the R language to researchers through a high-level interface and broad support for statistical methods such as t-tests and ANOVA. OpenStats was integrated into our electronic lab notebook Chemotion ELN via its third-party API, enabling direct data exchange with it. A pivotal feature of OpenStats is its ability to record each analysis step in a structured history. This record allows users to retrace their work and enables automatic replay of the entire analysis, promoting reproducibility and long-term data integrity. In the modern research landscape, Research Data Management (RDM) tools like electronic lab notebooks (ELNs) are crucial for generating reproducible, repeatable, and transparently documented data. However, integrating statistical analysis tools into RDM systems remained a challenge. We demonstrated how OpenStats can be seamlessly linked to Research Data Management (RDM) systems, using Chemotion ELN as a reference implementation, by our application to a standard dose-response assay scenario. This linkage allows the integration of statistical data analysis in the form of a closed, traceable workflow into the RDM world. It therefore complements systems that are aiming for reproducible and standardized workflows in the scientific environment.

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Publication Details

Journal
ChemRxiv
Published
2025-08-25
DOI
https://doi.org/10.26434/chemrxiv-2025-9rgbd
Primary Topic
Big Data and Business Intelligence
Type
article
Field-Weighted Citation Impact
0.00

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article

OpenStats: How to combine statistics and research data management (RDM) to leverage efficient scientific data analysis by guided statistics

Christoph W. Grathwol, Konrad Krämer, Pierre Tremouilhac, Nicole Jung et al.
ChemRxiv
Big Data and Business Intelligence
article

OpenStats: How to combine statistics and research data management (RDM) to leverage efficient scientific data analysis by guided statistics

Christoph W. Grathwol, Konrad Krämer, Pierre Tremouilhac, Nicole Jung, Fabian Mauz, Stefan Bräse
article en

Abstract

We developed OpenStats, a user-friendly web application that brings the power of the R language to researchers through a high-level interface and broad support for statistical methods such as t-tests and ANOVA. OpenStats was integrated into our electronic lab notebook Chemotion ELN via its third-party API, enabling direct data exchange with it. A pivotal feature of OpenStats is its ability to record each analysis step in a structured history. This record allows users to retrace their work and enables automatic replay of the entire analysis, promoting reproducibility and long-term data integrity. In the modern research landscape, Research Data Management (RDM) tools like electronic lab notebooks (ELNs) are crucial for generating reproducible, repeatable, and transparently documented data. However, integrating statistical analysis tools into RDM systems remained a challenge. We demonstrated how OpenStats can be seamlessly linked to Research Data Management (RDM) systems, using Chemotion ELN as a reference implementation, by our application to a standard dose-response assay scenario. This linkage allows the integration of statistical data analysis in the form of a closed, traceable workflow into the RDM world. It therefore complements systems that are aiming for reproducible and standardized workflows in the scientific environment.

ChemRxiv
Karlsruhe Institute of Technology (DE), Leibniz Institute of Plant Biochemistry (DE)
Deutsche Forschungsgemeinschaft
Openalex Percentile: Top 63%
Big Data and Business Intelligence
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