Episode- and Hospital-Level Modeling of Pan-Resistant Healthcare-Associated Infections (2020–2024) Using TabTransformer and Attention-Based LSTM Forecasting
<b>Background</b>: Pan-drug-resistant (PDR) Acinetobacterinfections are an escalating ICU threat, demanding both patient-level triage and facility-wide forecasting. <b>Objective</b>: The aim of this study was to build a dual-scale AI framework that (i) predicts PDR status at infection onset and (ii) forecasts hospital-level PDR burden through 2027. <b>Methods</b>: We retrospectively analyzed 270 <i>Acinetobacter</i> infection episodes (2020-2024) with 65 predictors spanning demographics, timelines, infection type, resistance-class flags, and a 25-drug antibiogram. TabTransformer and XGBoost were trained on 2020-2023 episodes (<i>n</i> = 210), evaluated by stratified 5-fold CV, and externally tested on 2024 episodes (<i>n</i> = 60). Metrics included AUROC, AUPRC, accuracy, and recall at 90% specificity; AUROC was optimism-corrected via 0.632 + bootstrap and DeLong-tested for drift. SHAP values quantified feature impact. Weekly PDR incidence was forecast with an attention-LSTM model retrained monthly (200 weekly origins, 4-week horizon) and benchmarked against seasonal-naïve, Prophet, and SARIMA models (MAPE and RMSE). Quarterly projections (TFT-lite) extended forecasts to 2027. <b>Results</b>: The CV AUROC was 0.924 (optimism-corrected 0.874); an ensemble of TabTransformer + XGBoost reached 0.958. The 2024 AUROC fell to 0.586 (<i>p</i> < 0.001), coinciding with a PDR prevalence drop (75→38%) and three covariates with PSIs > 1.0. Isotonic recalibration improved the Brier score from 0.326 to 0.207 and yielded a net benefit equivalent to 26 unnecessary isolation-days averted per 100 ICU admissions at a 0.20 threshold. SHAP highlighted Ampicillin/Sulbactam resistance, unknown acquisition mode, and device-related infection as dominant drivers. The attention-LSTM achieved a median weekly MAE of 0.10 (IQR: 0.028-0.985) vs. 1.00 for the seasonal-naïve rule, outperforming it on 48.5% of weeks and surpassing Prophet and SARIMA (MAPE = 6.2%, RMSE = 0.032). TFT-lite projected a ≥ 25% PDR tipping point in 2025 Q1 with a sustained rise in 2027. <b>Conclusions</b>: The proposed framework delivers explainable patient-level PDR risk scores and competitive 4-week and multi-year incidence forecasts despite temporal drift, supporting antimicrobial stewardship and ICU capacity planning. Shrinkage and bootstrap correction were applied to address the small sample size (EPV = 2.1), which poses an overfitting risk. Continuous recalibration and multi-center validation remain priorities.
Authors
- Nicoleta Luchian
- Mădălina Duceac (ORCID: https://orcid.org/0009-0002-3092-2324)
- Lăcrămioara Ochiuz (ORCID: https://orcid.org/0000-0001-6447-0958)
- Constantin Marcu
- Călin Gheorghe Buzea (ORCID: https://orcid.org/0000-0003-2791-3400)
- Dragoș Ioan Rusu (ORCID: https://orcid.org/0000-0002-5485-0620)
- Madălina Nicoleta Matei (ORCID: https://orcid.org/0000-0001-8482-2260)
- Alina Pleșea-Condratovici (ORCID: https://orcid.org/0000-0002-2710-7284)
- Ciprian Adrian Dinu (ORCID: https://orcid.org/0000-0001-9600-568X)
- Eva Maria Elkan
- Letiția Doina Duceac (ORCID: https://orcid.org/0000-0002-1652-2618)
- Camer Salim
Institutions
- Ovidius University (RO)
- Grigore T. Popa University of Medicine and Pharmacy (RO)
- "Dunarea de Jos" University of Galati (RO)
- Clinica de Pneumologie Iaşi (RO)
- University of Bacău (RO)
- National Institute of Research and Development for Technical Physics (RO)
Publication Details
- Journal
- Diagnostics
- Published
- 2025-08-25
- DOI
- https://doi.org/10.3390/diagnostics15172138
- Citations
- 1
- Primary Topic
- Antibiotic Resistance in Bacteria
- Type
- article
- Field-Weighted Citation Impact
- 0.59