Virtual Staining of Label-Free Tissue

Deep learning techniques create new opportunities to revolutionize tissue staining methods by digitally generating histological stains using trained neural networks, providing rapid, cost-effective, accurate and environmentally friendly alternatives to standard chemical staining methods. These deep learning-based virtual staining techniques can successfully generate different types of histological stains, including immunohistochemical stains, from label-free microscopic images of unstained samples by using, e.g., autofluorescence microscopy, quantitative phase imaging (QPI) and reflectance confocal microscopy. Similar approaches were also demonstrated for transforming images of an already stained tissue sample into another type of stain, performing virtual stain-to-stain transformations. In this presentation, I will provide an overview of our recent work on the use of deep neural networks for label-free tissue staining, also covering their biomedical applications.

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Publication Details

Published
2025-06-23
DOI
https://doi.org/10.1109/cleo/europe-eqec65582.2025.11110186
Primary Topic
Mesenchymal stem cell research
Type
article
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article

Virtual Staining of Label-Free Tissue

Aydogan Özcan
Mesenchymal stem cell research
article

Virtual Staining of Label-Free Tissue

Aydogan Özcan
article en

Abstract

Deep learning techniques create new opportunities to revolutionize tissue staining methods by digitally generating histological stains using trained neural networks, providing rapid, cost-effective, accurate and environmentally friendly alternatives to standard chemical staining methods. These deep learning-based virtual staining techniques can successfully generate different types of histological stains, including immunohistochemical stains, from label-free microscopic images of unstained samples by using, e.g., autofluorescence microscopy, quantitative phase imaging (QPI) and reflectance confocal microscopy. Similar approaches were also demonstrated for transforming images of an already stained tissue sample into another type of stain, performing virtual stain-to-stain transformations. In this presentation, I will provide an overview of our recent work on the use of deep neural networks for label-free tissue staining, also covering their biomedical applications.

California NanoSystems Institute (US)
Zero hunger
Openalex Percentile: Top 71%
Mesenchymal stem cell research
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