scmorph: a Python package for analysing single-cell morphological profiles

scmorph is a Python package to analyse single-cell data from imaging data of cell populations, specifically morphological profiling experiments, which generate large tabular data.scmorph combines domain-specific methods such as single-cell hit calling and batch correction with the versatile and scalable scverse tools to offer feature selection, dimensionality reduction, and more.Overall, scmorph brings together a host of single-cell morphological profiling methods, making it applicable for a wide range of experimental designs and workflows.