Combinatorial models for evolving representations of dynamical behaviours in biological networks

This theme issue is dedicated to ‘combinatorial’ models and their capacity to represent biological regulatory networks. As opposed to standard models using differential equations, ‘combinatorial’ models constitute a class of systems whose main property is that their global dynamics can be efficiently computed and their characterization rigorously proved, even in high-dimensional systems. Combinatorial models include Boolean networks and other discrete formalisms, piecewise affine or threshold networks and switching system models, as well as ‘coloured’ networks. This issue includes several recent examples of these formalisms and their contribution to analysis of biological networks.

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Publication Details

Journal
Interface Focus
Published
2025-08-22
DOI
https://doi.org/10.1098/rsfs.2025.0029
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
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article

Combinatorial models for evolving representations of dynamical behaviours in biological networks

Madalena Chaves, Elena Queirolo, Élisabeth Rémy
Interface Focus
Gene Regulatory Network Analysis
article

Combinatorial models for evolving representations of dynamical behaviours in biological networks

Madalena Chaves, Elena Queirolo, Élisabeth Rémy
article en

Abstract

This theme issue is dedicated to ‘combinatorial’ models and their capacity to represent biological regulatory networks. As opposed to standard models using differential equations, ‘combinatorial’ models constitute a class of systems whose main property is that their global dynamics can be efficiently computed and their characterization rigorously proved, even in high-dimensional systems. Combinatorial models include Boolean networks and other discrete formalisms, piecewise affine or threshold networks and switching system models, as well as ‘coloured’ networks. This issue includes several recent examples of these formalisms and their contribution to analysis of biological networks.

Interface FocusVol. 15(3)
Institut national de recherche en sciences et technologies du numérique (FR), Aix-Marseille Université (FR), Institut de recherche mathématique de Rennes (FR)
Openalex Percentile: Top 81%
Gene Regulatory Network Analysis
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