From Pleistocene Corridors to Isolated Peaks and Back: Biogeography of <i>Afrocarduus</i> (Compositae) in the Afromontane Archipelago

ABSTRACT Aim We investigated the biogeographic history and diversification dynamics of Afrocarduus , an Afromontane–Afroalpine genus endemic to eastern Africa. We aimed to assess the roles of geographic isolation, habitat transitions, and ecological speciation in shaping current diversity. Location The Afromontane and Afroalpine regions of East Africa and Ethiopia are situated along the Great Rift Valley system. Taxon Afrocarduus (Compositae: Carduinae), a genus comprising 18 endemic species. Methods We conducted a comprehensive taxonomic and geographic sampling of Afrocarduus , generating data from 489 nuclear loci. Phylogenomic and biogeographic ancestral estimation analyses were performed to infer the evolutionary history and historical biogeography of the genus. Results Afrocarduus originated in the Afromontane zone of eastern Africa during the Late Miocene (~10.7 Ma), with major diversification events occurring in the Early Pleistocene (~2.3 Ma). Most dispersal events occurred between neighbouring massifs, though occasional long‐distance dispersal between disjunct mountain systems was detected. The Turkana Depression and the Great Rift Valley have acted as major biogeographic barriers. Phylogenetic structure shows distinct clades occupying different regions. Ecological divergence between Afromontane and Afroalpine environments contributed to speciation, with at least six independent adaptations to Afroalpine conditions and multiple cases of ecological reversal. Stem loss, a trait associated with alpine habitats, evolved convergently in two clades. Closely related species often segregate by elevation or microhabitat within the same massif. Main Conclusions The diversification of Afrocarduus has been shaped by a combination of historical climate change, geographic isolation, and ecological adaptation. Our results emphasise the importance of ecological speciation and habitat transitions in Afrotemperate plant evolution and highlight the need for further research on understudied Afromontane taxa, especially under the threat of ongoing climate change.