Machine Learning in Nanoparticles Toxicology: Mechanisms, Predictive Modelling, and Risk Assessment Strategies

The increasing application of engineered nanoparticles (ENPs) in industry and medicine will require economic and ethically acceptable procedures for toxicological assessment. This paper employed supervised machine learning (ML) to model a new set of physicochemical data, correlating the 312 ENP samples contained in the eNano-Mapper database with ENP cytotoxicity. The major characteristics were particle size (mean = 68.5 nm), zeta potential (=18.6 mV), hydrodynamic diameter (102.3 nm), surface area, as well as solubility. Four approaches of ML: Logistic Regression (LR), Support Vector Machine (SVM), Random Forest (RF), and Extreme Gradient Boosting (XGBoost), have been tested, and XGBoost demonstrated 91% accuracy, 0.90 precision, 0.89 recall, 0.89 F1-score, and Area Under the Receiver Operating Characteristic (ROC) Curve (AUC) = 0.94. The Logistic Regression and SVM models reported lower scores (accuracy: 78% and 80%, AUC: 0.81 and 0.83, respectively), indicating a diminished capacity to identify non-linear toxicological trends. The SHAP analysis provided zeta potential (0.146), hydrodynamic diameter (0.131), and particle size (0.112) as the best predictive factors of toxicity. Particle size showed a significant correlation with hydrodynamic diameter (r = 0.78), suggesting that future testing procedures could be redundant. There were only five entries (misclassifications), with the majority between the high and moderate toxicity categories. The research presents a compelling, fact-based alternative to animal testing, thereby driving the development of safer-by-design nanoparticles and enhancing risk assessment.

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Publication Details

Journal
Journal of Science Innovation and Technology Research
Published
2025-08-22
DOI
https://doi.org/10.70382/ajsitr.v8i9.043
Citations
2
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
3.01
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article

Machine Learning in Nanoparticles Toxicology: Mechanisms, Predictive Modelling, and Risk Assessment Strategies

Benjamin J. Daniel, Akaninyene U. Akpan, Prince-charles Omin Itu, Felix Isidore Ibanga et al.
2 citations
Journal of Science Innovation and Technology Research
Computational Drug Discovery Methods
3.01
article

Machine Learning in Nanoparticles Toxicology: Mechanisms, Predictive Modelling, and Risk Assessment Strategies

Benjamin J. Daniel, Akaninyene U. Akpan, Prince-charles Omin Itu, Felix Isidore Ibanga, Ubong Bernard Essien, Prince Uche Micheal, Linda I. Ozohili
article en
2 citations

Abstract

The increasing application of engineered nanoparticles (ENPs) in industry and medicine will require economic and ethically acceptable procedures for toxicological assessment. This paper employed supervised machine learning (ML) to model a new set of physicochemical data, correlating the 312 ENP samples contained in the eNano-Mapper database with ENP cytotoxicity. The major characteristics were particle size (mean = 68.5 nm), zeta potential (=18.6 mV), hydrodynamic diameter (102.3 nm), surface area, as well as solubility. Four approaches of ML: Logistic Regression (LR), Support Vector Machine (SVM), Random Forest (RF), and Extreme Gradient Boosting (XGBoost), have been tested, and XGBoost demonstrated 91% accuracy, 0.90 precision, 0.89 recall, 0.89 F1-score, and Area Under the Receiver Operating Characteristic (ROC) Curve (AUC) = 0.94. The Logistic Regression and SVM models reported lower scores (accuracy: 78% and 80%, AUC: 0.81 and 0.83, respectively), indicating a diminished capacity to identify non-linear toxicological trends. The SHAP analysis provided zeta potential (0.146), hydrodynamic diameter (0.131), and particle size (0.112) as the best predictive factors of toxicity. Particle size showed a significant correlation with hydrodynamic diameter (r = 0.78), suggesting that future testing procedures could be redundant. There were only five entries (misclassifications), with the majority between the high and moderate toxicity categories. The research presents a compelling, fact-based alternative to animal testing, thereby driving the development of safer-by-design nanoparticles and enhancing risk assessment.

Journal of Science Innovation and Technology Research
University of Port Harcourt (NG), Akwa Ibom State University (NG), University of Uyo (NG), University of Calabar (NG), Coventry University (GB), University of Tennessee at Knoxville (US)
Openalex Percentile: Top 8%
Computational Drug Discovery Methods
3.01
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