Conservative consensus QSAR approach for the prediction of rat acute oral toxicity

• QSARs are able to predict acute oral GHS classifications conservatively. • CATMoS, VEGA and TEST predictions were combined in the form of consensus model. • The conservative consensus model (CCM) prediction was health protective. • No chemical classes or functional groups were significantly underpredicted. Consensus approaches are applied in different quantitative structure–activity relationship (QSAR) modeling contexts based on the assumption that combining individual model predictions will improve prediction reliability. This study evaluated the performance of TEST, CATMoS and VEGA models for prediction of oral rat LD 50 , both individually and in consensus, across a dataset of 6,229 organic compounds. Predicted LD 50 values from the models were compared for each compound, and the lowest value was assigned as the output of the conservative consensus model (CCM). Predictive accuracy was then evaluated based on the agreement of predicted LD 50 -based GHS category assignments with those derived experimentally. The aim was to allow for the most conservative value to be identified. Results showed that CCM had the highest over-prediction rate at 37 %, compared to TEST (24 %), CATMoS (25 %) and VEGA (8 %). Meanwhile, its under-prediction rate was lowest at 2 %, relative to TEST (20 %), CATMoS (10 %) and VEGA (5 %). Due to the method applied, CCM was the most conservative across all GHS categories. Further, structural analysis demonstrated that no specific chemical classes or functional groups were consistently underpredicted or overpredicted. The utility of CCM lies in its ability to establish a foundation for contextualizing the general use of consensus modeling, in order to derive health-protective oral rat LD 50 estimates under conditions of uncertainty, especially where experimental data are limited or absent.

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Publication Details

Journal
Computational Toxicology
Published
2025-08-20
DOI
https://doi.org/10.1016/j.comtox.2025.100374
Citations
1
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
1.50
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article

Conservative consensus QSAR approach for the prediction of rat acute oral toxicity

Jerry Achar, James W. Firman, M Cronin
1 citations
Computational Toxicology
Computational Drug Discovery Methods
1.50
article

Conservative consensus QSAR approach for the prediction of rat acute oral toxicity

Jerry Achar, James W. Firman, M Cronin
article en
1 citations

Abstract

• QSARs are able to predict acute oral GHS classifications conservatively. • CATMoS, VEGA and TEST predictions were combined in the form of consensus model. • The conservative consensus model (CCM) prediction was health protective. • No chemical classes or functional groups were significantly underpredicted. Consensus approaches are applied in different quantitative structure–activity relationship (QSAR) modeling contexts based on the assumption that combining individual model predictions will improve prediction reliability. This study evaluated the performance of TEST, CATMoS and VEGA models for prediction of oral rat LD 50 , both individually and in consensus, across a dataset of 6,229 organic compounds. Predicted LD 50 values from the models were compared for each compound, and the lowest value was assigned as the output of the conservative consensus model (CCM). Predictive accuracy was then evaluated based on the agreement of predicted LD 50 -based GHS category assignments with those derived experimentally. The aim was to allow for the most conservative value to be identified. Results showed that CCM had the highest over-prediction rate at 37 %, compared to TEST (24 %), CATMoS (25 %) and VEGA (8 %). Meanwhile, its under-prediction rate was lowest at 2 %, relative to TEST (20 %), CATMoS (10 %) and VEGA (5 %). Due to the method applied, CCM was the most conservative across all GHS categories. Further, structural analysis demonstrated that no specific chemical classes or functional groups were consistently underpredicted or overpredicted. The utility of CCM lies in its ability to establish a foundation for contextualizing the general use of consensus modeling, in order to derive health-protective oral rat LD 50 estimates under conditions of uncertainty, especially where experimental data are limited or absent.

Computational ToxicologyVol. 35
University of British Columbia (CA), Liverpool John Moores University (GB)
Zero hunger
Openalex Percentile: Top 14%
Computational Drug Discovery Methods
1.50
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