PLCNet: A 3D-CNN-Based Plant-Level Classification Network Hyperspectral Framework for Sweetpotato Virus Disease Detection

Sweetpotato virus disease (SPVD) poses a significant threat to global sweetpotato production; therefore, early, accurate field-scale detection is necessary. To address the limitations of the currently utilized assays, we propose PLCNet (Plant-Level Classification Network), a rapid, non-destructive SPVD identification framework using UAV-acquired hyperspectral imagery. High-resolution data from early sweetpotato growth stages were processed via three feature selection methods—Random Forest (RF), Minimum Redundancy Maximum Relevance (mRMR), and Local Covariance Matrix (LCM)—in combination with 24 vegetation indices. Variance Inflation Factor (VIF) analysis reduced multicollinearity, yielding an optimized SPVD-sensitive feature set. First, using the RF-selected bands and vegetation indices, we benchmarked four classifiers—Support Vector Machine (SVM), Gradient Boosting Decision Tree (GBDT), Residual Network (ResNet), and 3D Convolutional Neural Network (3D-CNN). Under identical inputs, the 3D-CNN achieved superior performance (OA = 96.55%, Macro F1 = 95.36%, UA_mean = 0.9498, PA_mean = 0.9504), outperforming SVM, GBDT, and ResNet. Second, with the same spectral–spatial features and 3D-CNN backbone, we compared a pixel-level baseline (CropdocNet) against our plant-level PLCNet. CropdocNet exhibited spatial fragmentation and isolated errors, whereas PLCNet’s two-stage pipeline—deep feature extraction followed by connected-component analysis and majority voting—aggregated voxel predictions into coherent whole-plant labels, substantially reducing noise and enhancing biological interpretability. By integrating optimized feature selection, deep learning, and plant-level post-processing, PLCNet delivers a scalable, high-throughput solution for precise SPVD monitoring in agricultural fields.