Multivariate genome-wide association analysis of dyslexia and quantitative reading skill improves gene discovery

The ability to read is an important life skill and a major route to education. Dyslexia, characterized by difficulties with accurate/ fluent word reading, and poor spelling is influenced by genetic variation, with a twin study heritability estimate of 0.4-0.6. Until recently, genomic investigations were limited by modest sample size. We used a multivariate genome-wide association study (GWAS) method, MTAG, to leverage summary statistics from two independent GWAS efforts, boosting power for analyses of dyslexia; the GenLang meta-analysis of word reading (N = 27,180) and the 23andMe, Inc., study of dyslexia (N<sub>cases</sub> = 51,800, N<sub>controls</sub> = 1,087,070). We increased the effective sample size to 1,228,832 participants, representing the largest genetic study of reading-related phenotypes to date. Our analyses identified 80 independent genome-wide significant loci, including 36 regions which were not previously reported as significant. Of these 36 loci, 13 were novel regions with no prior association with dyslexia. We observed clear genetic correlations with cognitive and educational measures. Gene-set analyses revealed significant enrichment of dyslexia-associated genes in four neuronal biological process pathways, and findings were further supported by enrichment of neuronally expressed genes in the developing embryonic brain. Polygenic index analysis of our multivariate results predicted between 2.34-4.73% of variance in reading traits in an independent sample, the National Child Development Study cohort (N = 6410). Polygenic adaptation was examined using a large panel of ancient genomes spanning the last ~15 k years. We did not find evidence of selection, suggesting that dyslexia has not been subject to recent selection pressure in Europeans. By combining existing datasets to improve statistical power, these results provide novel insights into the biology of dyslexia.

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Journal
Translational Psychiatry
Published
2025-08-18
DOI
https://doi.org/10.1038/s41398-025-03514-0
Citations
1
Primary Topic
Genetics and Neurodevelopmental Disorders
Type
article
Field-Weighted Citation Impact
1.82

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article

Multivariate genome-wide association analysis of dyslexia and quantitative reading skill improves gene discovery

Else Eising, Aly A. Khan, Anjali J. Shastri, Nicholas G. Martin et al.
1 citations
Translational Psychiatry
Genetics and Neurodevelopmental Disorders
1.82
article

Multivariate genome-wide association analysis of dyslexia and quantitative reading skill improves gene discovery

Else Eising, Aly A. Khan, Anjali J. Shastri, Nicholas G. Martin, Timothy C. Bates, Shubham Saini, Evan K. Irving-Pease, Jingchunzi Shi, Catherine Doust, Adam Auton, Julie M. Granka, Barry Hicks, Chris Eijsbouts, Vinh Tran, David A. Hinds, Chris German, Alan Kwong, Matthew J. Kmiecik, Michelle Luciano, K. Brito, Pierre Fontanillas, Joyce Y. Tung, Keng‐Han Lin, Catherine H. Weldon, Yanyu Liang, Simon E. Fisher, Stella Aslibekyan, Qiaojuan Jane Su, Suyash Shringarpure, Hayley S. Mountford, Emily DelloRusso, Wanwan Xu, Sayantan Das, Robert K. Bell, Sarah L. Elson, K. Bond, Matthew H. McIntyre, Reza Jabal, Zayn Cochinwala
article en
1 citations

Abstract

The ability to read is an important life skill and a major route to education. Dyslexia, characterized by difficulties with accurate/ fluent word reading, and poor spelling is influenced by genetic variation, with a twin study heritability estimate of 0.4-0.6. Until recently, genomic investigations were limited by modest sample size. We used a multivariate genome-wide association study (GWAS) method, MTAG, to leverage summary statistics from two independent GWAS efforts, boosting power for analyses of dyslexia; the GenLang meta-analysis of word reading (N = 27,180) and the 23andMe, Inc., study of dyslexia (N<sub>cases</sub> = 51,800, N<sub>controls</sub> = 1,087,070). We increased the effective sample size to 1,228,832 participants, representing the largest genetic study of reading-related phenotypes to date. Our analyses identified 80 independent genome-wide significant loci, including 36 regions which were not previously reported as significant. Of these 36 loci, 13 were novel regions with no prior association with dyslexia. We observed clear genetic correlations with cognitive and educational measures. Gene-set analyses revealed significant enrichment of dyslexia-associated genes in four neuronal biological process pathways, and findings were further supported by enrichment of neuronally expressed genes in the developing embryonic brain. Polygenic index analysis of our multivariate results predicted between 2.34-4.73% of variance in reading traits in an independent sample, the National Child Development Study cohort (N = 6410). Polygenic adaptation was examined using a large panel of ancient genomes spanning the last ~15 k years. We did not find evidence of selection, suggesting that dyslexia has not been subject to recent selection pressure in Europeans. By combining existing datasets to improve statistical power, these results provide novel insights into the biology of dyslexia.

Translational PsychiatryVol. 15(1)
University of Copenhagen (DK), Radboud University Nijmegen (NL), QIMR Berghofer Medical Research Institute (AU), Max Planck Institute for Psycholinguistics (NL), 23andMe (United States) (US), Language Science (South Korea) (KR), Lundbeck Foundation (DK), University of Edinburgh (GB)
Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Max-Planck-Gesellschaft, Directorate for Biological Sciences, Biotechnology and Biological Sciences Research Council
Openalex Percentile: Top 13%
Genetics and Neurodevelopmental Disorders
1.82
DOIOpen Access PDFOpenAlex
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