Marinivivus vitaminiproducens gen. nov., sp. nov., a vitamin B12-producing bacterium isolated from the coral Fungia sp. in South China Sea

A Gram-stain-negative, aerobic, non-motile and short rod-shaped bacterium, designated strain SCSIO 64248<sup>T</sup>, was isolated from the stony coral <i>Fungia</i> sp. collected from South China Sea. Phylogenetic analysis indicated that strain SCSIO 64248<sup>T</sup> belonged to the family <i>Geminicoccaceae</i> and showed the highest 16S rRNA gene similarities with the types of <i>Marinimicrococcus flavescens</i> (90.5%), <i>Arboricoccus pini</i> (90.2%) and <i>Benzoalithermus flavus</i> (89.8%). The whole genome of strain SCSIO 64248<sup>T</sup> was 4.9 Mbp with a 68.8mol% G+C content. It shared average amino acid identity (AAI) values of 52-56.2%, which is below the proposed AAI threshold at the genus level and when compared to the known species of <i>Geminicoccaceae</i>. Colonies of strain SCSIO 64248<sup>T</sup> are circular, pink and convex. It was able to grow in the range of 4-37 °C, at pH 6.0-10.0 and in the presence of up to 8.0% (w/v) NaCl concentration. The major cellular fatty acid (>9%) was summed feature 8, C<sub>19 : 0</sub> cyclo <i>ω</i>8<i>c</i> and C<sub>16 : 0</sub>, and the sole respiratory quinone was Q-10. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and an unidentified phospholipid. Data of polyphasic characteristics revealed that strain SCSIO 64248<sup>T</sup> represented a novel species of a new genus within the family <i>Geminicoccaceae</i>, for which the name <i>Marinivivus</i> gen. nov. is proposed with the type strain of the type species <i>Marinivivus vitaminiproducens</i> SCSIO 64248<sup>T</sup> (=MCCC 1K08013<sup>T</sup>=KCTC 92503<sup>T</sup>).

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2025-08-18
DOI
https://doi.org/10.1099/ijsem.0.006878
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Marinivivus vitaminiproducens gen. nov., sp. nov., a vitamin B12-producing bacterium isolated from the coral Fungia sp. in South China Sea

Songbiao Shi, Xinpeng Tian, Yi Jiang, Linni Jian et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Marinivivus vitaminiproducens gen. nov., sp. nov., a vitamin B12-producing bacterium isolated from the coral Fungia sp. in South China Sea

Songbiao Shi, Xinpeng Tian, Yi Jiang, Linni Jian, Qi Zeng, Lijuan Long
article en

Abstract

A Gram-stain-negative, aerobic, non-motile and short rod-shaped bacterium, designated strain SCSIO 64248<sup>T</sup>, was isolated from the stony coral <i>Fungia</i> sp. collected from South China Sea. Phylogenetic analysis indicated that strain SCSIO 64248<sup>T</sup> belonged to the family <i>Geminicoccaceae</i> and showed the highest 16S rRNA gene similarities with the types of <i>Marinimicrococcus flavescens</i> (90.5%), <i>Arboricoccus pini</i> (90.2%) and <i>Benzoalithermus flavus</i> (89.8%). The whole genome of strain SCSIO 64248<sup>T</sup> was 4.9 Mbp with a 68.8mol% G+C content. It shared average amino acid identity (AAI) values of 52-56.2%, which is below the proposed AAI threshold at the genus level and when compared to the known species of <i>Geminicoccaceae</i>. Colonies of strain SCSIO 64248<sup>T</sup> are circular, pink and convex. It was able to grow in the range of 4-37 °C, at pH 6.0-10.0 and in the presence of up to 8.0% (w/v) NaCl concentration. The major cellular fatty acid (>9%) was summed feature 8, C<sub>19 : 0</sub> cyclo <i>ω</i>8<i>c</i> and C<sub>16 : 0</sub>, and the sole respiratory quinone was Q-10. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and an unidentified phospholipid. Data of polyphasic characteristics revealed that strain SCSIO 64248<sup>T</sup> represented a novel species of a new genus within the family <i>Geminicoccaceae</i>, for which the name <i>Marinivivus</i> gen. nov. is proposed with the type strain of the type species <i>Marinivivus vitaminiproducens</i> SCSIO 64248<sup>T</sup> (=MCCC 1K08013<sup>T</sup>=KCTC 92503<sup>T</sup>).

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 75(8)
Yunnan University (CN), South China Sea Institute Of Oceanology (CN), University of Chinese Academy of Sciences (CN)
National Natural Science Foundation of China, China Postdoctoral Science Foundation
Openalex Percentile: Top 81%
Genomics and Phylogenetic Studies
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