A chromosome-level genome assembly and annotation for the beauty snake <i>Elaphe taeniura</i>

The genus Elaphe Fitzinger, a large species clade within Colubridae, comprises 18 non-venomous snake species. Among them, Elaphe taeniura serves as a representative species due to its wide distribution and strong adaptability. However, genomic studies on this group remain limited. Here, we present a chromosome-level, high-quality reference genome for this species. The genome is assembled by integrating high-accuracy PacBio HiFi long-read sequencing and Hi-C chromatin conformation capture technologies and comprehensively annotated with the aid of transcriptomic data. The genome of E. taeniura spans 1.62 Gb, with a scaffold N50 of 206.4 Mb and the longest scaffold reaching 344.4 Mb. The genome exhibits a BUSCO completeness score of 98.2% and contains 22,246 protein-coding genes. Comparative analysis between the assembled genome and three other colubrid species revealed high synteny. In addition, several chromosomal fusion and fission events were observed. This reference genome provides a valuable resource for studying the taxonomy, conservation, and evolutionary history of the widely distributed Elaphe species.

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Publication Details

Journal
Journal of Heredity
Published
2025-08-15
DOI
https://doi.org/10.1093/jhered/esaf055
Primary Topic
Amphibian and Reptile Biology
Type
article
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article

A chromosome-level genome assembly and annotation for the beauty snake Elaphe taeniura

Jiahao Chen, Songwen Tan, Qin Liu, Lianming Du et al.
Journal of Heredity
Amphibian and Reptile Biology
article

A chromosome-level genome assembly and annotation for the beauty snake Elaphe taeniura

Jiahao Chen, Songwen Tan, Qin Liu, Lianming Du, Peng Guo
article en

Abstract

The genus Elaphe Fitzinger, a large species clade within Colubridae, comprises 18 non-venomous snake species. Among them, Elaphe taeniura serves as a representative species due to its wide distribution and strong adaptability. However, genomic studies on this group remain limited. Here, we present a chromosome-level, high-quality reference genome for this species. The genome is assembled by integrating high-accuracy PacBio HiFi long-read sequencing and Hi-C chromatin conformation capture technologies and comprehensively annotated with the aid of transcriptomic data. The genome of E. taeniura spans 1.62 Gb, with a scaffold N50 of 206.4 Mb and the longest scaffold reaching 344.4 Mb. The genome exhibits a BUSCO completeness score of 98.2% and contains 22,246 protein-coding genes. Comparative analysis between the assembled genome and three other colubrid species revealed high synteny. In addition, several chromosomal fusion and fission events were observed. This reference genome provides a valuable resource for studying the taxonomy, conservation, and evolutionary history of the widely distributed Elaphe species.

Journal of HeredityVol. 117(1)
Tibet University (CN), University of Kinshasa (CD), Chengdu University (CN), Yibin University (CN), Institute for Advanced Study (DE)
Life in Land
Openalex Percentile: Top 80%
Amphibian and Reptile Biology
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A chromosome-level genome assembly and annotation for the beauty snake <i>Elaphe taeniura</i> — Jiahao Chen, Songwen Tan, et al. · Journal of Heredity (2025) | TGRS Research Map | TGRS