A chromosome-level genome assembly and annotation for the beauty snake <i>Elaphe taeniura</i>
The genus Elaphe Fitzinger, a large species clade within Colubridae, comprises 18 non-venomous snake species. Among them, Elaphe taeniura serves as a representative species due to its wide distribution and strong adaptability. However, genomic studies on this group remain limited. Here, we present a chromosome-level, high-quality reference genome for this species. The genome is assembled by integrating high-accuracy PacBio HiFi long-read sequencing and Hi-C chromatin conformation capture technologies and comprehensively annotated with the aid of transcriptomic data. The genome of E. taeniura spans 1.62 Gb, with a scaffold N50 of 206.4 Mb and the longest scaffold reaching 344.4 Mb. The genome exhibits a BUSCO completeness score of 98.2% and contains 22,246 protein-coding genes. Comparative analysis between the assembled genome and three other colubrid species revealed high synteny. In addition, several chromosomal fusion and fission events were observed. This reference genome provides a valuable resource for studying the taxonomy, conservation, and evolutionary history of the widely distributed Elaphe species.
Authors
- Jiahao Chen (ORCID: https://orcid.org/0000-0002-9754-5626)
- Songwen Tan
- Qin Liu (ORCID: https://orcid.org/0000-0001-8402-6491)
- Lianming Du (ORCID: https://orcid.org/0000-0003-0646-0887)
- Peng Guo (ORCID: https://orcid.org/0000-0001-5585-292X)
Institutions
- Tibet University (CN)
- University of Kinshasa (CD)
- Chengdu University (CN)
- Yibin University (CN)
- Institute for Advanced Study (DE)
Publication Details
- Journal
- Journal of Heredity
- Published
- 2025-08-15
- DOI
- https://doi.org/10.1093/jhered/esaf055
- Primary Topic
- Amphibian and Reptile Biology
- Type
- article
- Field-Weighted Citation Impact
- 0.00