<scp>AI</scp> for difficult herbarium specimens: identification of peat mosses (subgenus <i>Sphagnum</i>) without dissection

Artificial intelligence (AI) for image-based herbarium specimen identification has thus far focused on plants that can be identified by eye. Here, we develop the first AI focused on identifying herbarium specimens of a bryophyte group, peat mosses in Sphagnum subgenus Sphagnum. These plants have substantial morphological plasticity, and confident identifications require time-consuming dissections and microscopy. We hypothesized that AI, using unmagnified low-resolution images, can (H<sub>1</sub>) identify species and (H<sub>2</sub>) discover novel morphological characters. We collected 4386 publicly available herbarium specimen images of all 10 North American species and imaged an additional 105 specimens with determinations verified by DNA and morphology. AI identification was generally successful with our newly formulated FireNetSEz model (68% AUCPR (area under the curve: precision recall)). We produced a reduced dataset (the five most imaged species) that we, the authors, could attempt. Our identifications took hours and were all lower-scoring than the AI. These H<sub>1</sub> results show that AI can learn hard-to-identify botanical species without microscopy and outperform both generalist botanists and Sphagnum experts. Regarding H<sub>2</sub>, we found the AI focuses on edges of organs that humans often ignore. AI holds promise for hard botanical identifications and the potential to rapidly identify Sphagnum, which is important for studying peatlands that strongly impact climate.

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Institutions

Publication Details

Journal
New Phytologist
Published
2025-08-16
DOI
https://doi.org/10.1111/nph.70461
Citations
1
Primary Topic
Peatlands and Wetlands Ecology
Type
article
Field-Weighted Citation Impact
1.72

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article

AI for difficult herbarium specimens: identification of peat mosses (subgenus Sphagnum) without dissection

Damon P. Little, Blanka Aguero, Michael Tessler, A. Jonathan Shaw
1 citations
New Phytologist
Peatlands and Wetlands Ecology
1.72
article

AI for difficult herbarium specimens: identification of peat mosses (subgenus Sphagnum) without dissection

Damon P. Little, Blanka Aguero, Michael Tessler, A. Jonathan Shaw
article en
1 citations

Abstract

Artificial intelligence (AI) for image-based herbarium specimen identification has thus far focused on plants that can be identified by eye. Here, we develop the first AI focused on identifying herbarium specimens of a bryophyte group, peat mosses in Sphagnum subgenus Sphagnum. These plants have substantial morphological plasticity, and confident identifications require time-consuming dissections and microscopy. We hypothesized that AI, using unmagnified low-resolution images, can (H<sub>1</sub>) identify species and (H<sub>2</sub>) discover novel morphological characters. We collected 4386 publicly available herbarium specimen images of all 10 North American species and imaged an additional 105 specimens with determinations verified by DNA and morphology. AI identification was generally successful with our newly formulated FireNetSEz model (68% AUCPR (area under the curve: precision recall)). We produced a reduced dataset (the five most imaged species) that we, the authors, could attempt. Our identifications took hours and were all lower-scoring than the AI. These H<sub>1</sub> results show that AI can learn hard-to-identify botanical species without microscopy and outperform both generalist botanists and Sphagnum experts. Regarding H<sub>2</sub>, we found the AI focuses on edges of organs that humans often ignore. AI holds promise for hard botanical identifications and the potential to rapidly identify Sphagnum, which is important for studying peatlands that strongly impact climate.

New Phytologist
The Graduate Center, CUNY (US), McPherson College (US), American Museum of Natural History (US), City University of New York (US), New York Botanical Garden (US), Medgar Evers College (US), Australian National Herbarium (AU)
National Science Foundation, Directorate for Biological Sciences
Climate action
Openalex Percentile: Top 14%
Peatlands and Wetlands Ecology
1.72
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