Toward the Era of Visualizing Chemical Reactions : Cinematic Chemistry Enabled by High-Speed Atomic-Resolution Electron Microscopy

This study presents a real-time atomic-resolution observation of chemical reaction dynamics at the single-molecule level using single-molecule atomic-resolution time-resolved electron microscopy (SMART-EM). [60]Fullerene (C60) molecules were encapsulated in carbon nanotubes and monitored at 1600 frames per second using a direct electron detection (DED) camera. To overcome the inherently low signal-to-noise ratio in such ultrafast imaging, we applied Chambolle total variation denoising, enabling clear visualization of single-frame structures. This allowed us to resolve a cascade reaction featuring multiple transient intermediates, including a highly strained, short-lived species (<3 ms). Structural identification was achieved via cross-correlation image matching analysis with simulated TEM images based on Osawa-Tomanek models. Even fleeting high-energy states were experimentally captured, validating theoretical predictions and revealing the stochastic nature of molecular trajectories. This work establishes a new paradigm for visualizing molecular dynamics, highlighting the emerging field of “cinematic chemistry.”

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Publication Details

Journal
Vacuum and Surface Science
Published
2025-08-09
DOI
https://doi.org/10.1380/vss.68.442
Primary Topic
Innovative Microfluidic and Catalytic Techniques Innovation
Type
article
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article

Toward the Era of Visualizing Chemical Reactions : Cinematic Chemistry Enabled by High-Speed Atomic-Resolution Electron Microscopy

Koji Harano, Eiichi Nakamura, Toshiki Shimizu
Vacuum and Surface Science
Innovative Microfluidic and Catalytic Techniques Innovation
article

Toward the Era of Visualizing Chemical Reactions : Cinematic Chemistry Enabled by High-Speed Atomic-Resolution Electron Microscopy

Koji Harano, Eiichi Nakamura, Toshiki Shimizu
article en

Abstract

This study presents a real-time atomic-resolution observation of chemical reaction dynamics at the single-molecule level using single-molecule atomic-resolution time-resolved electron microscopy (SMART-EM). [60]Fullerene (C60) molecules were encapsulated in carbon nanotubes and monitored at 1600 frames per second using a direct electron detection (DED) camera. To overcome the inherently low signal-to-noise ratio in such ultrafast imaging, we applied Chambolle total variation denoising, enabling clear visualization of single-frame structures. This allowed us to resolve a cascade reaction featuring multiple transient intermediates, including a highly strained, short-lived species (<3 ms). Structural identification was achieved via cross-correlation image matching analysis with simulated TEM images based on Osawa-Tomanek models. Even fleeting high-energy states were experimentally captured, validating theoretical predictions and revealing the stochastic nature of molecular trajectories. This work establishes a new paradigm for visualizing molecular dynamics, highlighting the emerging field of “cinematic chemistry.”

Vacuum and Surface ScienceVol. 68(8)
National Institute for Materials Science (JP), The University of Tokyo (JP), Tokyo University of Agriculture and Technology (JP)
Openalex Percentile: Top 80%
Innovative Microfluidic and Catalytic Techniques Innovation
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