Simplest mechanism builder algorithm (simba): an automated microkinetic model discovery tool

Microkinetic models are key for evaluating industrial processes' efficiency and chemicals' environmental impact. Manual construction of these models is difficult and time-consuming, prompting a shift to automated methods. This study introduces SiMBA (Simplest Mechanism Builder Algorithm), a novel approach for generating microkinetic models from kinetic data. SiMBA operates through four phases: mechanism generation, mechanism translation, parameter estimation, and model comparison. Our approach systematically proposes reaction mechanisms, using matrix representations and a parallelized backtracking algorithm to manage complexity. These mechanisms are then translated into microkinetic models represented by ordinary differential equations, and optimi/zed to fit available data. Models are compared using information criteria to balance accuracy and complexity, iterating until convergence to an optimal model is reached. Case studies on an aldol condensation reaction, and the dehydration of fructose demonstrate SiMBA's effectiveness in distilling complex kinetic behaviors into simple yet accurate models. While SiMBA predicts intermediates correctly for all case studies, it does not chemically identify intermediates, requiring expert input for complex systems. Despite this, SiMBA significantly enhances mechanistic exploration, offering a robust initial mechanism that accelerates the development and modeling of chemical processes. By automating microkinetic model generation from a data-first approach, SiMBA opens new avenues for future research in automated mechanism discovery.

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Publication Details

Journal
Chemical Science
Published
2025-08-11
DOI
https://doi.org/10.1039/d5sc01473e
Primary Topic
Water Quality Monitoring and Analysis
Type
article
Field-Weighted Citation Impact
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article

Simplest mechanism builder algorithm (simba): an automated microkinetic model discovery tool

King Kuok Hii, Miguel Ángel de Carvalho Servia, Ehecatl Antonio del Rio‐Chanona, Dongda Zhang et al.
Chemical Science
Water Quality Monitoring and Analysis
article

Simplest mechanism builder algorithm (simba): an automated microkinetic model discovery tool

King Kuok Hii, Miguel Ángel de Carvalho Servia, Ehecatl Antonio del Rio‐Chanona, Dongda Zhang, Klaus Hellgardt
article en

Abstract

Microkinetic models are key for evaluating industrial processes' efficiency and chemicals' environmental impact. Manual construction of these models is difficult and time-consuming, prompting a shift to automated methods. This study introduces SiMBA (Simplest Mechanism Builder Algorithm), a novel approach for generating microkinetic models from kinetic data. SiMBA operates through four phases: mechanism generation, mechanism translation, parameter estimation, and model comparison. Our approach systematically proposes reaction mechanisms, using matrix representations and a parallelized backtracking algorithm to manage complexity. These mechanisms are then translated into microkinetic models represented by ordinary differential equations, and optimi/zed to fit available data. Models are compared using information criteria to balance accuracy and complexity, iterating until convergence to an optimal model is reached. Case studies on an aldol condensation reaction, and the dehydration of fructose demonstrate SiMBA's effectiveness in distilling complex kinetic behaviors into simple yet accurate models. While SiMBA predicts intermediates correctly for all case studies, it does not chemically identify intermediates, requiring expert input for complex systems. Despite this, SiMBA significantly enhances mechanistic exploration, offering a robust initial mechanism that accelerates the development and modeling of chemical processes. By automating microkinetic model generation from a data-first approach, SiMBA opens new avenues for future research in automated mechanism discovery.

Chemical Science
University of Manchester (GB), Imperial College London (GB)
Responsible consumption and production
Openalex Percentile: Top 74%
Water Quality Monitoring and Analysis
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Simplest mechanism builder algorithm (simba): an automated microkinetic model discovery tool — King Kuok Hii, Miguel Ángel de Carvalho Servia, et al. · Chemical Science (2025) | TGRS Research Map | TGRS