Shared Core and Host Specificities of Culturable Pathogenic Yeast Microbiome in Fresh and Dry Feces of Five Synanthropic Wild Birds (Rock Pigeon, European Starling, White Wagtail, Great Tit and House Sparrow)

Public health in a densely populated city is inextricably linked to the state of the urban environment. The microclimate, the condition of water sources and sanitary well-being are just some of the many environmental factors that have a strong influence on people’s health. The presence of urban green spaces and various birds in cities is extremely important, also to create a more favorable psychological atmosphere for the people who live and/or work there. At the same time, it should not be forgotten that the feces of synanthropic birds are a favorable environment for various potentially pathogenic species of microorganisms, including yeasts of the genus Candida. Here, we investigated the culturable, potentially pathogenic ascomycetous yeast microbiome in the fresh and dry feces of five synanthropic birds (Rock Pigeon, European Starling, White Wagtail, Great Tit and House Sparrow). The samples were collected in spring (May 2024). In total, 48 Rock Pigeon, 47 European Starling, 38 White Wagtail, 32 Great Tit and 30 House Sparrow droppings were collected and analyzed. The selective medium Brilliance Candida Agar was used for cultivation. A total of 638 strains were isolated belonging to 9 yeast species (Arxiozyma bovina, Candida albicans, Nakaseomyces glabratus, Clavispora lusitaniae, C. tropicalis, C. parapsilosis, Pichia kudriavzevii, Debaryomyces hansenii and D. fabryi). All detected yeast species were molecularly identified using the ITS rDNA region. The microbiome of potential pathogens in fresh feces proved to be significantly host-dependent. Most pathogenic yeasts (7 species)—A. bovina, C. albicans, N. glabratus, Cl. lusitaniae, C. tropicalis, C. parapsilosis and P. kudriavzevii—were only detected in fresh feces from pigeons. This list contains five out of six ascomycetous species from the list of critical, high and medium-important yeast pathogens published in the World Health Organization fungal list. Of the potentially pathogenic yeasts, two species were observed in the dry droppings of various birds: C. parapsilosis and P. kudriavzevii. No significant differences in the diversity of culturable pathogens in dry droppings were observed between the different hosts. Fresh droppings from synanthropic birds, especially pigeons (and to a lesser extent dry droppings), therefore pose a health risk. In this study, we did not find any feces from synanthropic birds in which potentially pathogenic ascomycetous yeasts were not detected. To maintain the sanitary safety and well-being of citizens, it is very important to regulate the number of synanthropic birds (primarily pigeons), especially in sensitive areas such as playgrounds, hospital territories, etc.