Modulations in the binding selectivity of phenol and thiophenol with ethyl cinnamate: an IR spectroscopic and quantum chemical investigation

Complexes of (E)-ethylcinnamate (EC), a widely prevalent plant secondary metabolite, with two hydrogen bond donors phenol (Ph) and thiophenol (TPh), have been studied under ambient conditions in solution. The former, characterized by multiple electron-rich centers, offers multiple accessible sites to which the phenolic O-H donor or the thiophenolic S-H donor can bind. Experimental shifts in donor stretching frequencies as well as in signature vibrations of the acceptor EC molecule are interpreted in combination with quantum chemical calculations to assign the binding preferences of both Ph and TPh. It is observed that the phenolic O-H binds almost exclusively to the highly electronegative carbonyl oxygen on EC through an O-H⋯O H-bond. However, there is a loss of selectivity in the case of the thiophenolic S-H donor, which shows equal propensity to bind both to the oxygen centres through the S-H⋯O H-bond and to the more diffuse benzene π-cloud on EC, through the S-H⋯π H-bond. The observations suggest that the S-H⋯π H-bond is strong enough to compete with the S-H⋯O H-bond, unlike the O-H⋯π H-bond, which is always a weaker variant of the conventional O-H⋯O type. Noticeable changes are observed in predicted geometries at the H-bond interfaces for the thiophenolic complexes, as compared to the phenolic complexes. While dispersion plays a major role in the stabilization of both EC-Ph and EC-TPh complexes, the observed modulations in intermolecular binding are largely an outcome of the delicate interplay of electrostatic and dispersion interactions. Specific binding preferences appear to be the effect of inherent attributes of donor-acceptor groups. TPh, being an acid of "softer" nature, has a greater tendency to bind to the "softer" π-electron acceptor site on EC, compared to the "harder" phenolic donor Ph, which prefers the "harder" and more electronegative carbonyl oxygen site. The results lend additional insights into the subtle effects of heavier atom substitution on biomolecular recognition.

Authors

Institutions

Publication Details

Journal
Physical Chemistry Chemical Physics
Published
2025-01-01
DOI
https://doi.org/10.1039/d5cp02031j
Citations
1
Primary Topic
Photochemistry and Electron Transfer Studies
Type
article
Field-Weighted Citation Impact
1.75
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Modulations in the binding selectivity of phenol and thiophenol with ethyl cinnamate: an IR spectroscopic and quantum chemical investigation

Pujarini Banerjee, Puja Samanta
1 citations
Physical Chemistry Chemical Physics
Photochemistry and Electron Transfer Studies
1.75
article

Modulations in the binding selectivity of phenol and thiophenol with ethyl cinnamate: an IR spectroscopic and quantum chemical investigation

Pujarini Banerjee, Puja Samanta
article en
1 citations

Abstract

Complexes of (E)-ethylcinnamate (EC), a widely prevalent plant secondary metabolite, with two hydrogen bond donors phenol (Ph) and thiophenol (TPh), have been studied under ambient conditions in solution. The former, characterized by multiple electron-rich centers, offers multiple accessible sites to which the phenolic O-H donor or the thiophenolic S-H donor can bind. Experimental shifts in donor stretching frequencies as well as in signature vibrations of the acceptor EC molecule are interpreted in combination with quantum chemical calculations to assign the binding preferences of both Ph and TPh. It is observed that the phenolic O-H binds almost exclusively to the highly electronegative carbonyl oxygen on EC through an O-H⋯O H-bond. However, there is a loss of selectivity in the case of the thiophenolic S-H donor, which shows equal propensity to bind both to the oxygen centres through the S-H⋯O H-bond and to the more diffuse benzene π-cloud on EC, through the S-H⋯π H-bond. The observations suggest that the S-H⋯π H-bond is strong enough to compete with the S-H⋯O H-bond, unlike the O-H⋯π H-bond, which is always a weaker variant of the conventional O-H⋯O type. Noticeable changes are observed in predicted geometries at the H-bond interfaces for the thiophenolic complexes, as compared to the phenolic complexes. While dispersion plays a major role in the stabilization of both EC-Ph and EC-TPh complexes, the observed modulations in intermolecular binding are largely an outcome of the delicate interplay of electrostatic and dispersion interactions. Specific binding preferences appear to be the effect of inherent attributes of donor-acceptor groups. TPh, being an acid of "softer" nature, has a greater tendency to bind to the "softer" π-electron acceptor site on EC, compared to the "harder" phenolic donor Ph, which prefers the "harder" and more electronegative carbonyl oxygen site. The results lend additional insights into the subtle effects of heavier atom substitution on biomolecular recognition.

Physical Chemistry Chemical PhysicsVol. 27(36)
Diamond Harbour Women's University (IN)
Openalex Percentile: Top 14%
Photochemistry and Electron Transfer Studies
1.75
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.