HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data

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Journal
BMC Bioinformatics
Published
2025-08-14
DOI
https://doi.org/10.1186/s12859-025-06189-y
Primary Topic
HIV Research and Treatment
Type
article
Field-Weighted Citation Impact
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article

HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data

Emma C. Thomson, Oliver Laeyendecker, Mohammed Limbada, Pia Kivelä et al.
BMC Bioinformatics
HIV Research and Treatment
article

HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data

Emma C. Thomson, Oliver Laeyendecker, Mohammed Limbada, Pia Kivelä, Jairam R. Lingappa, Chris Wymant, Swee Hoe Ong, Ben Berkhout, George MacIntyre-Cockett, Myron S. Cohen, Helen Ayles, Ronald Moses Galiwango, Nelly Mugo, Margreet Bakker, Barry R. Kosloff, David R. Bonsall, Kholoud Porter, Astrid Gall, Tanya Golubchik, Lucie Abeler‐Dörner, Huldrych F. Günthard, Jan Albert, Jared M. Baeten, Sarah Fidler, Paul Kellam, Roger D. Kouyos, Deogratius Ssemwanga, M. Kate Grabowski, Oliver Ratmann, Joseph Kagaayi, Pontiano Kaleebu, Joshua T. Herbeck, Susan H. Eshleman, Mark van der Valk, Marion Cornelissen, Andrew Mujugira, Jacques Fellay, Connie Celum, Richard Hayes, François Blanquart, David Burns, Ard van Sighem, Matthew Hall, Daniela Bezemer, Laurence Meyer, Norbert Bannert, Barbara Gunsenheimer‐Bartmeyer, Christophe Fraser, Peter Reiss
article en

Abstract

No abstract available for this paper.
BMC BioinformaticsVol. 26(1)
University of North Carolina at Chapel Hill (US), SIB Swiss Institute of Bioinformatics (CH), Centre National de la Recherche Scientifique (FR), National Institutes of Health (US), European Bioinformatics Institute (GB), Karolinska University Hospital (SE), Centre for Human Genetics (GB), Johns Hopkins University (US), Inserm (FR), Collège de France (FR), University of Washington (US), University of Zurich (CH), Université Paris Cité (FR), Robert Koch Institute (DE), Université Paris Sciences et Lettres (FR), Université Paris-Saclay (FR), Johns Hopkins Medicine (US), Helsinki University Hospital (FI), Wellcome Sanger Institute (GB), Karolinska Institutet (SE), Kenya Medical Research Institute (KE), University of Zambia (ZM), University of Oxford (GB), London School of Hygiene & Tropical Medicine (GB), Assistance Publique – Hôpitaux de Paris (FR), University Hospital of Zurich (CH), Centre de recherche en Epidémiologie et Santé des Populations (FR), Bellevue Hospital Center (US), NIHR Imperial Biomedical Research Centre (GB), Centre Interdisciplinaire de Recherche en Biologie (FR), Infectious Diseases Institute (UG), Rakai Health Sciences Program (UG), Stichting HIV Monitoring (NL), Amsterdam Institute for Global Health and Development (NL), National Clinical Research (US), National Institute of Allergy and Infectious Diseases (US), Zambart (ZM), Amsterdam University Medical Centers (NL), Institute for Disease Modeling (US), Bicêtre Hospital (FR), University College London (GB), Imperial College London (GB), École Polytechnique Fédérale de Lausanne (CH), Makerere University (UG), University of Amsterdam (NL), Uganda Virus Research Institute (UG), University of Lausanne (CH)
Bill and Melinda Gates Foundation, European Research Council, National Health and Medical Research Council, National Institute of Allergy and Infectious Diseases
Good health and well-being
Openalex Percentile: Top 77%
HIV Research and Treatment
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