Directed Evolution of Branched-Chain α-Keto Acid Decarboxylase for 3-Hydroxypropionic Acid Production in <i>Escherichia coli</i> via Oxaloacetate
3-Hydroxypropionic acid (3-HP) serves as a crucial platform chemical with diverse applications across various industries. In this study, the oxaloacetate pathway was utilized for 3-HP production. This pathway involves the decarboxylation of oxaloacetate into malonic semialdehyde, catalyzed by branched-chain α-keto acid decarboxylase (KdcA), which is subsequently reduced to 3-HP by dehydrogenases. Directed evolution of KdcA was carried out to enhance its catalytic efficiency toward oxaloacetate, resulting in a KdcA<sup>M8</sup> mutant with the following substitutions: S286R, S287T, F381H, F382P, L534S, L535F, M538T, and G539F. Compared to wild-type (WT) KdcA, KdcA<sup>M8</sup> exhibits a lower <i>K</i><sub>M</sub> value toward oxaloacetate (<i>K</i><sub>M</sub> = 1.15 mM vs <i>K</i><sub>M</sub> > 25 mM). Among these mutations, the single mutants S286R and S287T exhibited 5.5-fold and 1.3-fold increased activities, respectively. Instead of WT KdcA, the KdcA<sup>M8</sup> mutant was integrated into <i>Escherichia coli</i> (<i>E. coli</i>) BL21 strain, resulting in the production of 3-HP at a concentration of 0.11 mM. To further improve 3-HP production, two dehydrogenases were compared for the downstream conversion of malonic semialdehyde into 3-HP, and two carboxylases were explored to enhance the upstream precursor supply of oxaloacetate. Additionally, the growth conditions were optimized. Finally, a nonnatural oxaloacetate pathway was successfully engineered in the <i>E. coli</i> BL21 strain, achieving a 3-HP titer of approximately 0.71 mM from glucose. This work illustrates that protein engineering is a powerful tool for modulating flux in the target pathway and holds promise for the future development of the oxaloacetate pathway to improve the 3-HP yield.
Authors
- Huub J. M. de Groot (ORCID: https://orcid.org/0000-0002-8796-1212)
- René C. L. Olsthoorn (ORCID: https://orcid.org/0000-0003-0315-3005)
- Chuang Wang (ORCID: https://orcid.org/0000-0002-3696-2856)
Institutions
- Leiden University (NL)
Publication Details
- Journal
- ACS Synthetic Biology
- Published
- 2025-08-15
- DOI
- https://doi.org/10.1021/acssynbio.5c00267
- Citations
- 1
- Primary Topic
- Microbial Metabolic Engineering and Bioproduction
- Type
- article
- Field-Weighted Citation Impact
- 0.81
Funders
- China Scholarship Council