Directed Evolution of Branched-Chain α-Keto Acid Decarboxylase for 3-Hydroxypropionic Acid Production in <i>Escherichia coli</i> via Oxaloacetate

3-Hydroxypropionic acid (3-HP) serves as a crucial platform chemical with diverse applications across various industries. In this study, the oxaloacetate pathway was utilized for 3-HP production. This pathway involves the decarboxylation of oxaloacetate into malonic semialdehyde, catalyzed by branched-chain α-keto acid decarboxylase (KdcA), which is subsequently reduced to 3-HP by dehydrogenases. Directed evolution of KdcA was carried out to enhance its catalytic efficiency toward oxaloacetate, resulting in a KdcA<sup>M8</sup> mutant with the following substitutions: S286R, S287T, F381H, F382P, L534S, L535F, M538T, and G539F. Compared to wild-type (WT) KdcA, KdcA<sup>M8</sup> exhibits a lower <i>K</i><sub>M</sub> value toward oxaloacetate (<i>K</i><sub>M</sub> = 1.15 mM vs <i>K</i><sub>M</sub> > 25 mM). Among these mutations, the single mutants S286R and S287T exhibited 5.5-fold and 1.3-fold increased activities, respectively. Instead of WT KdcA, the KdcA<sup>M8</sup> mutant was integrated into <i>Escherichia coli</i> (<i>E. coli</i>) BL21 strain, resulting in the production of 3-HP at a concentration of 0.11 mM. To further improve 3-HP production, two dehydrogenases were compared for the downstream conversion of malonic semialdehyde into 3-HP, and two carboxylases were explored to enhance the upstream precursor supply of oxaloacetate. Additionally, the growth conditions were optimized. Finally, a nonnatural oxaloacetate pathway was successfully engineered in the <i>E. coli</i> BL21 strain, achieving a 3-HP titer of approximately 0.71 mM from glucose. This work illustrates that protein engineering is a powerful tool for modulating flux in the target pathway and holds promise for the future development of the oxaloacetate pathway to improve the 3-HP yield.

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Journal
ACS Synthetic Biology
Published
2025-08-15
DOI
https://doi.org/10.1021/acssynbio.5c00267
Citations
1
Primary Topic
Microbial Metabolic Engineering and Bioproduction
Type
article
Field-Weighted Citation Impact
0.81

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article

Directed Evolution of Branched-Chain α-Keto Acid Decarboxylase for 3-Hydroxypropionic Acid Production in Escherichia coli via Oxaloacetate

Huub J. M. de Groot, René C. L. Olsthoorn, Chuang Wang
1 citations
ACS Synthetic Biology
Microbial Metabolic Engineering and Bioproduction
0.81
article

Directed Evolution of Branched-Chain α-Keto Acid Decarboxylase for 3-Hydroxypropionic Acid Production in Escherichia coli via Oxaloacetate

Huub J. M. de Groot, René C. L. Olsthoorn, Chuang Wang
article en
1 citations

Abstract

3-Hydroxypropionic acid (3-HP) serves as a crucial platform chemical with diverse applications across various industries. In this study, the oxaloacetate pathway was utilized for 3-HP production. This pathway involves the decarboxylation of oxaloacetate into malonic semialdehyde, catalyzed by branched-chain α-keto acid decarboxylase (KdcA), which is subsequently reduced to 3-HP by dehydrogenases. Directed evolution of KdcA was carried out to enhance its catalytic efficiency toward oxaloacetate, resulting in a KdcA<sup>M8</sup> mutant with the following substitutions: S286R, S287T, F381H, F382P, L534S, L535F, M538T, and G539F. Compared to wild-type (WT) KdcA, KdcA<sup>M8</sup> exhibits a lower <i>K</i><sub>M</sub> value toward oxaloacetate (<i>K</i><sub>M</sub> = 1.15 mM vs <i>K</i><sub>M</sub> > 25 mM). Among these mutations, the single mutants S286R and S287T exhibited 5.5-fold and 1.3-fold increased activities, respectively. Instead of WT KdcA, the KdcA<sup>M8</sup> mutant was integrated into <i>Escherichia coli</i> (<i>E. coli</i>) BL21 strain, resulting in the production of 3-HP at a concentration of 0.11 mM. To further improve 3-HP production, two dehydrogenases were compared for the downstream conversion of malonic semialdehyde into 3-HP, and two carboxylases were explored to enhance the upstream precursor supply of oxaloacetate. Additionally, the growth conditions were optimized. Finally, a nonnatural oxaloacetate pathway was successfully engineered in the <i>E. coli</i> BL21 strain, achieving a 3-HP titer of approximately 0.71 mM from glucose. This work illustrates that protein engineering is a powerful tool for modulating flux in the target pathway and holds promise for the future development of the oxaloacetate pathway to improve the 3-HP yield.

ACS Synthetic BiologyVol. 14(9)
Leiden University (NL)
China Scholarship Council
Openalex Percentile: Top 25%
Microbial Metabolic Engineering and Bioproduction
0.81
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