Network Pharmacology and Machine Learning Identify Flavonoids as Potential Senotherapeutics

<b>Background/Objectives:</b> Cellular senescence is characterised by irreversible cell cycle arrest and the secretion of a proinflammatory phenotype. In recent years, senescent cell accumulation and senescence-associated secretory phenotype (SASP) secretion have been linked to the onset of chronic degenerative diseases associated with ageing. In this context, the senotherapeutic compounds have emerged as promising drugs that specifically eliminate senescent cells (senolytics) or diminish the damage caused by SASP (senomorphics). On the other hand, computational approaches, such as network pharmacology and machine learning, have revolutionised the identification of novel drugs. These tools enable the analysis of large volumes of compounds and the optimisation of the search for the most promising ones as potential drugs. Therefore, we employed such approaches in the present study to identify potential senotherapeutic compounds. <b>Methods:</b> First, we constructed drug-protein interaction networks related to cellular senescence. Then, using three machine learning models (Random Forest, Support Vector Machine, and K-Nearest Neighbours), we classified these compounds based on their therapeutic potential against senescence. <b>Results:</b> Our results enabled us to identify 714 compounds with potential senescent therapeutic activity, of which 270 exhibited desirable medicinal chemistry properties, and we developed an interactive web tool freely accessible to the scientific community. <b>Conclusions:</b> we found that flavonoids were the most abundant compound class from which 18 have never been reported as senotherapeutics.

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Publication Details

Journal
Pharmaceuticals
Published
2025-08-09
DOI
https://doi.org/10.3390/ph18081176
Citations
2
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
3.01

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article

Network Pharmacology and Machine Learning Identify Flavonoids as Potential Senotherapeutics

María Elizbeth Álvarez-Sánchez, José Alberto Santiago-de-la-Cruz, Juan Carlos Gómez-Verján, Nadia Alejandra Rivero-Segura
2 citations
Pharmaceuticals
Computational Drug Discovery Methods
3.01
article

Network Pharmacology and Machine Learning Identify Flavonoids as Potential Senotherapeutics

María Elizbeth Álvarez-Sánchez, José Alberto Santiago-de-la-Cruz, Juan Carlos Gómez-Verján, Nadia Alejandra Rivero-Segura
article en
2 citations

Abstract

<b>Background/Objectives:</b> Cellular senescence is characterised by irreversible cell cycle arrest and the secretion of a proinflammatory phenotype. In recent years, senescent cell accumulation and senescence-associated secretory phenotype (SASP) secretion have been linked to the onset of chronic degenerative diseases associated with ageing. In this context, the senotherapeutic compounds have emerged as promising drugs that specifically eliminate senescent cells (senolytics) or diminish the damage caused by SASP (senomorphics). On the other hand, computational approaches, such as network pharmacology and machine learning, have revolutionised the identification of novel drugs. These tools enable the analysis of large volumes of compounds and the optimisation of the search for the most promising ones as potential drugs. Therefore, we employed such approaches in the present study to identify potential senotherapeutic compounds. <b>Methods:</b> First, we constructed drug-protein interaction networks related to cellular senescence. Then, using three machine learning models (Random Forest, Support Vector Machine, and K-Nearest Neighbours), we classified these compounds based on their therapeutic potential against senescence. <b>Results:</b> Our results enabled us to identify 714 compounds with potential senescent therapeutic activity, of which 270 exhibited desirable medicinal chemistry properties, and we developed an interactive web tool freely accessible to the scientific community. <b>Conclusions:</b> we found that flavonoids were the most abundant compound class from which 18 have never been reported as senotherapeutics.

PharmaceuticalsVol. 18(8)
Universidad Autónoma de la Ciudad de México (MX), Instituto Nacional de Pediatria (MX)
Consejo Nacional de Ciencia y Tecnología
Openalex Percentile: Top 8%
Computational Drug Discovery Methods
3.01
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