Research on 3D liver blood vessel extraction technology based on deep learning

The three-dimensional liver vessel extraction is a medical image segmentation technique aimed at automatically extracting vascular structures within the liver from CT or MRI scans[1], providing reliable support for pre-surgical planning. This paper primarily introduces a liver vessel extraction method implemented using the PyTorch framework. Based on the 2D U-Net network, and referencing the 3D U-Net proposed by Çiçek Ö et al.[2], a 3D U-Net network is designed and constructed for this experiment. To address the under-segmentation issue of small vessels in 3D U-Net, residual blocks (Res Block) are introduced in both the encoder and decoder stages, forming the 3D Res-UNet network. Experimental results demonstrate that, with the same number of training iterations and hyperparameter settings, the 3D Res-UNet network achieves a 2.6% improvement in the Dice coefficient compared to the 3D U-Net. To broaden the receptive field and capture contextual information at multiple scales, a 3D Spatial Pyramid Pooling (3D ASPP) module with multi-scale dilation rates is incorporated into the 3D Res-UNet network.

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Publication Details

Published
2025-08-08
DOI
https://doi.org/10.1117/12.3074237
Primary Topic
Medical Imaging and Analysis
Type
article
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article

Research on 3D liver blood vessel extraction technology based on deep learning

Shiqi Xia
Medical Imaging and Analysis
article

Research on 3D liver blood vessel extraction technology based on deep learning

Shiqi Xia
article en

Abstract

The three-dimensional liver vessel extraction is a medical image segmentation technique aimed at automatically extracting vascular structures within the liver from CT or MRI scans[1], providing reliable support for pre-surgical planning. This paper primarily introduces a liver vessel extraction method implemented using the PyTorch framework. Based on the 2D U-Net network, and referencing the 3D U-Net proposed by Çiçek Ö et al.[2], a 3D U-Net network is designed and constructed for this experiment. To address the under-segmentation issue of small vessels in 3D U-Net, residual blocks (Res Block) are introduced in both the encoder and decoder stages, forming the 3D Res-UNet network. Experimental results demonstrate that, with the same number of training iterations and hyperparameter settings, the 3D Res-UNet network achieves a 2.6% improvement in the Dice coefficient compared to the 3D U-Net. To broaden the receptive field and capture contextual information at multiple scales, a 3D Spatial Pyramid Pooling (3D ASPP) module with multi-scale dilation rates is incorporated into the 3D Res-UNet network.

Openalex Percentile: Top 81%
Medical Imaging and Analysis
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