Genome assembly at the chromosome level of Clinopodium barosmum

Clinopodium barosmum (C. barosmum), a rare species within the genus Clinopodium of the Lamiaceae family in northwestern Yunnan, is highly valued for its exceptional ecological and medicinal properties. This study presents the successful assembly of the chromosome-level genome of C. barosmum utilizing Nanopore sequencing technology and chromosome conformation capture techniques. The assembled genome spans 518.59 Mb, with a scaffold N50 length of 21.12 Mb. Notably, 99.97% of the genomic data (518.42 Mb) was accurately anchored and assigned to 24 chromosomes. Analysis revealed a high proportion of repetitive sequences, comprising approximately 51.81% of the genome, and identified 41,864 protein-coding genes. Furthermore, a comparative genomic analysis was conducted, establishing a robust foundation and providing valuable reference data for future investigations of C. barosmum.

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Publication Details

Journal
Scientific Data
Published
2025-08-12
DOI
https://doi.org/10.1038/s41597-025-05784-1
Citations
1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.81

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article

Genome assembly at the chromosome level of Clinopodium barosmum

Tianmeng Liu, Xiaokang Hu, Zhifang Li, Jian Huang et al.
1 citations
Scientific Data
Genomics and Phylogenetic Studies
0.81
article

Genome assembly at the chromosome level of Clinopodium barosmum

Tianmeng Liu, Xiaokang Hu, Zhifang Li, Jian Huang, Xingyu Yang, Ya Yang, Shujie Luo
article en
1 citations

Abstract

Clinopodium barosmum (C. barosmum), a rare species within the genus Clinopodium of the Lamiaceae family in northwestern Yunnan, is highly valued for its exceptional ecological and medicinal properties. This study presents the successful assembly of the chromosome-level genome of C. barosmum utilizing Nanopore sequencing technology and chromosome conformation capture techniques. The assembled genome spans 518.59 Mb, with a scaffold N50 length of 21.12 Mb. Notably, 99.97% of the genomic data (518.42 Mb) was accurately anchored and assigned to 24 chromosomes. Analysis revealed a high proportion of repetitive sequences, comprising approximately 51.81% of the genome, and identified 41,864 protein-coding genes. Furthermore, a comparative genomic analysis was conducted, establishing a robust foundation and providing valuable reference data for future investigations of C. barosmum.

Scientific DataVol. 12(1)
Chinese Academy of Tropical Agricultural Sciences (CN), Kunming Institute of Botany (CN), Xizang Minzu University (CN), Chinese Academy of Sciences (CN), Xishuangbanna Tropical Botanical Garden (CN), Yunnan Academy of Agricultural Sciences (CN), University of Chinese Academy of Sciences (CN), Dali University (CN)
Dali University
Life in Land
Openalex Percentile: Top 25%
Genomics and Phylogenetic Studies
0.81
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