An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting

RNA post-transcriptional modifications act by stabilizing the functional conformations of RNA. While their role in messenger RNA (mRNA) decoding is well established, it is less clear how transfer RNA (tRNA) modifications outside the anticodon contribute to tRNA stability and accurate protein synthesis. Absence of such modifications causes translation errors, including mRNA frameshifting. By integrating single-molecule fluorescence resonance energy transfer and cryogenic electron microscopy, we demonstrate that the N<sup>1</sup>-methylguanosine (m<sup>1</sup>G) modification at position 37 of Escherichia coli tRNA<sup>ProL</sup> is necessary and sufficient for modulating the conformational energy of this tRNA on the ribosome so as to suppress +1 frameshifting otherwise induced by this tRNA. Six structures of E. coli ribosomal complexes carrying tRNA<sup>ProL</sup> lacking m<sup>1</sup>G37 show this tRNA forms four and even five codon-anticodon base pairs as it moves into the +1 frame, allowing direct visualization of the long-standing hypothesis that a four base pair codon-anticodon can form during +1 frameshifting.

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Publication Details

Journal
Nature Communications
Published
2025-08-11
DOI
https://doi.org/10.1038/s41467-025-62342-4
Citations
5
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
4.03

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article

An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting

Mattingly JM, Howard Gamper, Evelyn Kimbrough, Wei Ning et al.
5 citations
Nature Communications
RNA and protein synthesis mechanisms
4.03
article

An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting

Mattingly JM, Howard Gamper, Evelyn Kimbrough, Wei Ning, C.M. Dunham, Ha An Nguyen, Ya‐Ming Hou, Nevette A. Bailey, Haixing Li, Ruben L. Gonzalez
article en
5 citations

Abstract

RNA post-transcriptional modifications act by stabilizing the functional conformations of RNA. While their role in messenger RNA (mRNA) decoding is well established, it is less clear how transfer RNA (tRNA) modifications outside the anticodon contribute to tRNA stability and accurate protein synthesis. Absence of such modifications causes translation errors, including mRNA frameshifting. By integrating single-molecule fluorescence resonance energy transfer and cryogenic electron microscopy, we demonstrate that the N<sup>1</sup>-methylguanosine (m<sup>1</sup>G) modification at position 37 of Escherichia coli tRNA<sup>ProL</sup> is necessary and sufficient for modulating the conformational energy of this tRNA on the ribosome so as to suppress +1 frameshifting otherwise induced by this tRNA. Six structures of E. coli ribosomal complexes carrying tRNA<sup>ProL</sup> lacking m<sup>1</sup>G37 show this tRNA forms four and even five codon-anticodon base pairs as it moves into the +1 frame, allowing direct visualization of the long-standing hypothesis that a four base pair codon-anticodon can form during +1 frameshifting.

Nature CommunicationsVol. 16(1)
Thomas Jefferson University (US), Emory University (US), City University of Hong Kong (HK), Columbia University (US)
National Science Foundation, Charles H. Revson Foundation, Emory University, National Institutes of Health, Division of Chemistry, Common Fund
Affordable and clean energy
Openalex Percentile: Top 6%
RNA and protein synthesis mechanisms
4.03
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