Chromosome-level genome assembly of the wasp Vespa mandarinia (Hymenoptera: Vespidae)

The wasp Vespa mandarinia raised in Yunnan Province of China exhibits a relatively large body size, potent toxicity, invasive potential, and ecological impacts. These characteristics are closely linked to its acute olfactory sensitivity, venom-aided predation, and flight capacity. However, the lack of high-quality genomic resources limits understanding of its adaptive evolution and invasive potential. In this study, DNBSEQ, Oxford Nanopore sequencing, and Hi-C sequencing were employed to sequence and assemble the genome of V. mandarinia. The assembled genome consisted of 25 chromosomes. The genome size was 191.80 Mb. The scaffold N50 was 9.20 Mb. The complete BUSCOs of genome was 99.5%. A total of 12,023 genes in the V. mandarinia genome were predicted and 11,541 genes (99.84%) were functionally annotated. V. mandarinia wasps showed high level of collinearity with V. velutina. The genome will provide valuable resources for understanding the evolution of wasp, also provide information for venom research on V. mandarinia.

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Journal
Scientific Data
Published
2025-08-11
DOI
https://doi.org/10.1038/s41597-025-05749-4
Primary Topic
Insect and Arachnid Ecology and Behavior
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article
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article

Chromosome-level genome assembly of the wasp Vespa mandarinia (Hymenoptera: Vespidae)

Yuan-Chong Shi, Pu Yang, Xianjun Niu, Hai-Feng Mo
2 links
Scientific Data
Insect and Arachnid Ecology and Behavior
article

Chromosome-level genome assembly of the wasp Vespa mandarinia (Hymenoptera: Vespidae)

Yuan-Chong Shi, Pu Yang, Xianjun Niu, Hai-Feng Mo
article en

Abstract

The wasp Vespa mandarinia raised in Yunnan Province of China exhibits a relatively large body size, potent toxicity, invasive potential, and ecological impacts. These characteristics are closely linked to its acute olfactory sensitivity, venom-aided predation, and flight capacity. However, the lack of high-quality genomic resources limits understanding of its adaptive evolution and invasive potential. In this study, DNBSEQ, Oxford Nanopore sequencing, and Hi-C sequencing were employed to sequence and assemble the genome of V. mandarinia. The assembled genome consisted of 25 chromosomes. The genome size was 191.80 Mb. The scaffold N50 was 9.20 Mb. The complete BUSCOs of genome was 99.5%. A total of 12,023 genes in the V. mandarinia genome were predicted and 11,541 genes (99.84%) were functionally annotated. V. mandarinia wasps showed high level of collinearity with V. velutina. The genome will provide valuable resources for understanding the evolution of wasp, also provide information for venom research on V. mandarinia.

Scientific DataVol. 12(1)
Research Institute of Resource Insects (CN), Chinese Academy of Forestry (CN), State Forestry and Grassland Administration (CN)
Life in Land
Openalex Percentile: Top 77%
Insect and Arachnid Ecology and Behavior
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