The −10 region adjacent to open reading frames is a common expression pattern in <i>Deinococcus-Thermus</i>

Gene transcription and translation are fundamental processes that underpin the vitality of living organisms. In bacteria, the classic promoter elements for transcription include the -35 region and the -10 region, whereas the ribosome binding site (RBS) is essential for translation. Our investigation of the upstream sequences of ORFs in <i>Deinococcus radiodurans</i> has confirmed a -10 region-like motif, which appears as 5'-TANNNT-3' (-10-motif). Through rigorous experimental validation, we have established that this -10-motif functions as the classical -10 region of the promoter during transcription, responsible for initiating transcription of leaderless genes (mRNA products that do not have or only have a very short 5'-UTR), and exhibits specific spacing requirements relative to the ORF. Moreover, our findings suggest that sequences containing -10-motif can serve as promoters for <i>D. radiodurans</i> and introduction of the -35 region at appropriate positions can significantly enhance transcription levels. Genomic analysis revealed that the -10-motif located a few base pairs (bp) upstream of ORFs is common within the <i>Deinococcus-Thermus</i> (<i>D-T</i>) phylum (also known as <i>Deinococcota</i>) and responsible for the transcriptional initiation of leaderless genes. Given these insights, we propose that the -10 region adjacent to the ORF for gene expression via leaderless mRNA constitutes an important mode of expression in the <i>D-T</i> phylum, which may contribute to the extraordinary environmental adaptability observed in this group of microorganisms.

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Publication Details

Journal
Life Science Alliance
Published
2025-08-11
DOI
https://doi.org/10.26508/lsa.202503354
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
0.00

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article

The −10 region adjacent to open reading frames is a common expression pattern in Deinococcus-Thermus

Liangyan Wang, Yuejin Hua, Huizhi Lu, Shitong Zhong et al.
Life Science Alliance
RNA and protein synthesis mechanisms
article

The −10 region adjacent to open reading frames is a common expression pattern in Deinococcus-Thermus

Liangyan Wang, Yuejin Hua, Huizhi Lu, Shitong Zhong, Shuang Song, Linjia Wang
article en

Abstract

Gene transcription and translation are fundamental processes that underpin the vitality of living organisms. In bacteria, the classic promoter elements for transcription include the -35 region and the -10 region, whereas the ribosome binding site (RBS) is essential for translation. Our investigation of the upstream sequences of ORFs in <i>Deinococcus radiodurans</i> has confirmed a -10 region-like motif, which appears as 5'-TANNNT-3' (-10-motif). Through rigorous experimental validation, we have established that this -10-motif functions as the classical -10 region of the promoter during transcription, responsible for initiating transcription of leaderless genes (mRNA products that do not have or only have a very short 5'-UTR), and exhibits specific spacing requirements relative to the ORF. Moreover, our findings suggest that sequences containing -10-motif can serve as promoters for <i>D. radiodurans</i> and introduction of the -35 region at appropriate positions can significantly enhance transcription levels. Genomic analysis revealed that the -10-motif located a few base pairs (bp) upstream of ORFs is common within the <i>Deinococcus-Thermus</i> (<i>D-T</i>) phylum (also known as <i>Deinococcota</i>) and responsible for the transcriptional initiation of leaderless genes. Given these insights, we propose that the -10 region adjacent to the ORF for gene expression via leaderless mRNA constitutes an important mode of expression in the <i>D-T</i> phylum, which may contribute to the extraordinary environmental adaptability observed in this group of microorganisms.

Life Science AllianceVol. 8(11)
Zhejiang Cancer Hospital (CN), Zhejiang University (CN)
National Natural Science Foundation of China, Natural Science Foundation of Zhejiang Province
Openalex Percentile: Top 82%
RNA and protein synthesis mechanisms
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