Powder diffraction crystal structure determination using generative models

Accurate crystal structure determination is critical across all scientific disciplines involving crystalline materials. However, solving and refining crystal structures from powder X-ray diffraction (PXRD) data is traditionally a labor-intensive process that demands substantial expertise. Here we introduce PXRDGen, an end-to-end neural network that determines crystal structures by learning joint structural distributions from experimentally stable crystals and their PXRD, producing atomically accurate structures refined through PXRD data. PXRDGen integrates a pretrained XRD encoder, a diffusion/flow-based structure generator, and a Rietveld refinement module, solving structures with unparalleled accuracy in seconds. Evaluation on MP-20 dataset reveals a record high matching rate of 82% (1-sample) and 96% (20-samples) for valid compounds, with Root Mean Square Error (RMSE) approaching the precision limits of Rietveld refinement. PXRDGen effectively tackles key challenges in PXRD, such as the resolution of overlapping peaks, localization of light atoms, and differentiation of neighboring elements.

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Publication Details

Journal
Nature Communications
Published
2025-08-11
DOI
https://doi.org/10.1038/s41467-025-62708-8
Citations
4
Primary Topic
X-ray Diffraction in Crystallography
Type
article
Field-Weighted Citation Impact
2.07

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article

Powder diffraction crystal structure determination using generative models

Q Li, Wenbing Huang, Junyang Liu, Hongming Weng et al.
4 citations
Nature Communications
X-ray Diffraction in Crystallography
2.07
article

Powder diffraction crystal structure determination using generative models

Q Li, Wenbing Huang, Junyang Liu, Hongming Weng, Liming Wu, Xiaolong Chen, Shifeng Jin, Tiannian Zhu, Rui Jiao
article en
4 citations

Abstract

Accurate crystal structure determination is critical across all scientific disciplines involving crystalline materials. However, solving and refining crystal structures from powder X-ray diffraction (PXRD) data is traditionally a labor-intensive process that demands substantial expertise. Here we introduce PXRDGen, an end-to-end neural network that determines crystal structures by learning joint structural distributions from experimentally stable crystals and their PXRD, producing atomically accurate structures refined through PXRD data. PXRDGen integrates a pretrained XRD encoder, a diffusion/flow-based structure generator, and a Rietveld refinement module, solving structures with unparalleled accuracy in seconds. Evaluation on MP-20 dataset reveals a record high matching rate of 82% (1-sample) and 96% (20-samples) for valid compounds, with Root Mean Square Error (RMSE) approaching the precision limits of Rietveld refinement. PXRDGen effectively tackles key challenges in PXRD, such as the resolution of overlapping peaks, localization of light atoms, and differentiation of neighboring elements.

Nature CommunicationsVol. 16(1)
Beijing Institute of Big Data Research (CN), Beijing Academy of Artificial Intelligence (CN), Next Generation Technology (United States) (US), FZU ‒ Institute of Physics of the Academy of Sciences of the Czech Republic (CZ), National Laboratory for Superconductivity (CN), University of Chinese Academy of Sciences (CN), Renmin University of China (CN), Tsinghua University (CN)
Westlake University, National Natural Science Foundation of China, Beijing Nova Program
Decent work and economic growth
Openalex Percentile: Top 12%
X-ray Diffraction in Crystallography
2.07
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