StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities
Software is available at GitHub and implemented in C, R, and Bash. Software is supported on Linux and MacOS, with packages available on Bioconda or as a Docker container. The source code at the time of publication is also available on figshare at the doi: 10.6084/m9.figshare.29420780.
Authors
- Jordan E. Bisanz (ORCID: https://orcid.org/0000-0002-8649-1706)
- Shuchang Tian (ORCID: https://orcid.org/0009-0008-7920-4693)
- Kerim Heber (ORCID: https://orcid.org/0009-0008-0443-294X)
- Daniela Betancurt-Anzola
- Heejung Koo (ORCID: https://orcid.org/0009-0009-3715-9713)
Institutions
- Pennsylvania State University (US)
- Health & Life (Taiwan) (TW)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-08-01
- DOI
- https://doi.org/10.1093/bioinformatics/btaf440
- Citations
- 2
- Primary Topic
- Gut microbiota and health
- Type
- article
- Field-Weighted Citation Impact
- 1.61