Evidence triangulator: using large language models to extract and synthesize causal evidence across study designs

Health strategies increasingly emphasize both behavioural and biomedical interventions, yet the complex and often contradictory guidance on diet, behavior, and health outcomes complicates evidence-based decision-making. Evidence triangulation across diverse study designs is essential for balancing biases and establishing causality, but scalable, automated methods for achieving this are lacking. In this study, we assess the performance of large language models in extracting both ontological and methodological information from scientific literature to automate evidence triangulation. A two-step extraction approach-focusing on exposure-outcome concepts first, followed by relation extraction-outperforms a one-step method, particularly in identifying the direction of effect (F1 = 0.86) and statistical significance (F1 = 0.96). Using salt intake and blood pressure as a case study, we calculate the Convergency of Evidence and Level of Convergency, finding a strong excitatory effect of salt on blood pressure (942 studies), and weak excitatory effect on cardiovascular diseases and deaths (124 studies). This approach complements traditional meta-analyses by integrating evidence across study designs, and enabling rapid, dynamic assessment of scientific controversies.

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Publication Details

Journal
Nature Communications
Published
2025-08-09
DOI
https://doi.org/10.1038/s41467-025-62783-x
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
0.00

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article

Evidence triangulator: using large language models to extract and synthesize causal evidence across study designs

Xuanyu Shi, Jian Du, Wenjing Zhao, Ting Chen et al.
Nature Communications
Biomedical Text Mining and Ontologies
article

Evidence triangulator: using large language models to extract and synthesize causal evidence across study designs

Xuanyu Shi, Jian Du, Wenjing Zhao, Ting Chen, Chao Yang
article en

Abstract

Health strategies increasingly emphasize both behavioural and biomedical interventions, yet the complex and often contradictory guidance on diet, behavior, and health outcomes complicates evidence-based decision-making. Evidence triangulation across diverse study designs is essential for balancing biases and establishing causality, but scalable, automated methods for achieving this are lacking. In this study, we assess the performance of large language models in extracting both ontological and methodological information from scientific literature to automate evidence triangulation. A two-step extraction approach-focusing on exposure-outcome concepts first, followed by relation extraction-outperforms a one-step method, particularly in identifying the direction of effect (F1 = 0.86) and statistical significance (F1 = 0.96). Using salt intake and blood pressure as a case study, we calculate the Convergency of Evidence and Level of Convergency, finding a strong excitatory effect of salt on blood pressure (942 studies), and weak excitatory effect on cardiovascular diseases and deaths (124 studies). This approach complements traditional meta-analyses by integrating evidence across study designs, and enabling rapid, dynamic assessment of scientific controversies.

Nature CommunicationsVol. 16(1)
Peking University (CN), Peking University First Hospital (CN), Dublin City University (IE)
National Natural Science Foundation of China, Sun Yat-sen University, Peking University, Peking University Third Hospital
Peace, Justice and strong institutions
Openalex Percentile: Top 82%
Biomedical Text Mining and Ontologies
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Evidence triangulator: using large language models to extract and synthesize causal evidence across study designs — Xuanyu Shi, Jian Du, et al. · Nature Communications (2025) | TGRS Research Map | TGRS