Advancing Aqueous Solubility Prediction: A Machine Learning Approach for Organic Compounds Using a Curated Data Set

Aqueous solubility is one key property of a chemical compound that determines its possible use in different applications, from drug development to materials sciences. In this work, we present a model for the prediction of aqueous solubility that leverages a curated data set merged from four distinct sources. This data set encompasses a diverse range of organic compounds, providing a robust foundation for our investigation of solubility prediction. Our approach involves employing a variety of machine learning and deep learning models that combine an extensive array of chemical descriptors, fingerprints, and functional groups. This methodology is designed to address the complexities of solubility prediction and is tailored to achieve high accuracy and generalization. We tested the finalized model on a diverse data set of 1282 unique organic compounds from the Huuskonen data set. The results of our analysis demonstrate the success of our model, which, given an <i>R</i><sup>2</sup> value of 0.92 and an MAE value of 0.40, outperforms existing prediction methods for aqueous solubility on one of the most diverse data sets in the field.

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Publication Details

Journal
Journal of Chemical Information and Modeling
Published
2025-08-10
DOI
https://doi.org/10.1021/acs.jcim.4c02399
Citations
2
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
3.01

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article

Advancing Aqueous Solubility Prediction: A Machine Learning Approach for Organic Compounds Using a Curated Data Set

Sylvia Vanderheiden, Christoph W. Grathwol, Konrad Krämer, Stefan Braese et al.
2 citations
Journal of Chemical Information and Modeling
Computational Drug Discovery Methods
3.01
article

Advancing Aqueous Solubility Prediction: A Machine Learning Approach for Organic Compounds Using a Curated Data Set

Sylvia Vanderheiden, Christoph W. Grathwol, Konrad Krämer, Stefan Braese, Pascal Friederich, Nicole Jung, Mushtaq Ali
article en
2 citations

Abstract

Aqueous solubility is one key property of a chemical compound that determines its possible use in different applications, from drug development to materials sciences. In this work, we present a model for the prediction of aqueous solubility that leverages a curated data set merged from four distinct sources. This data set encompasses a diverse range of organic compounds, providing a robust foundation for our investigation of solubility prediction. Our approach involves employing a variety of machine learning and deep learning models that combine an extensive array of chemical descriptors, fingerprints, and functional groups. This methodology is designed to address the complexities of solubility prediction and is tailored to achieve high accuracy and generalization. We tested the finalized model on a diverse data set of 1282 unique organic compounds from the Huuskonen data set. The results of our analysis demonstrate the success of our model, which, given an <i>R</i><sup>2</sup> value of 0.92 and an MAE value of 0.40, outperforms existing prediction methods for aqueous solubility on one of the most diverse data sets in the field.

Journal of Chemical Information and ModelingVol. 65(16)
Karlsruhe Institute of Technology (DE)
Karlsruhe Institute of Technology, Ministerium für Wissenschaft, Forschung und Kunst Baden-Württemberg
Openalex Percentile: Top 8%
Computational Drug Discovery Methods
3.01
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Advancing Aqueous Solubility Prediction: A Machine Learning Approach for Organic Compounds Using a Curated Data Set — Sylvia Vanderheiden, Christoph W. Grathwol, et al. · Journal of Chemical Information and Modeling (2025) | TGRS Research Map | TGRS