Temporal regulation of organelle biogenesis

Organelle abundance in cells is tightly regulated in response to external stimuli, but the underlying mechanisms remain poorly understood. Time-lapse imaging of fluorescently labelled organelles enables single-cell measurements of organelle copy numbers, revealing the time evolution of their distribution across a cell population. Building on a recently proposed kinetic model of organelle biogenesis, which incorporates de novo synthesis, fission, fusion, and degradation, we explore the time-dependent dynamics of organelle abundance. While previous studies focused on steady-state properties, here we calculate the first two moments of: 1) organelle copy numbers over time, and 2) first passage times to reach a specified organelle count. We show that these two moments provide a powerful means to discriminate between different mechanisms of organelle biogenesis. Notably, the time-dependent behaviour of organelle biogenesis reveals richer dynamics compared to the steady-state scenario. Our findings shed light on how cells attain steady-state organelle abundance after cell division and environmental perturbation.

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Publication Details

Journal
Physical Biology
Published
2025-08-08
DOI
https://doi.org/10.1088/1478-3975/adf9af
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
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article

Temporal regulation of organelle biogenesis

Arivazhagan Nagarajan, Sandeep Choubey, Smruti Dixit
Physical Biology
Single-cell and spatial transcriptomics
article

Temporal regulation of organelle biogenesis

Arivazhagan Nagarajan, Sandeep Choubey, Smruti Dixit
article en

Abstract

Organelle abundance in cells is tightly regulated in response to external stimuli, but the underlying mechanisms remain poorly understood. Time-lapse imaging of fluorescently labelled organelles enables single-cell measurements of organelle copy numbers, revealing the time evolution of their distribution across a cell population. Building on a recently proposed kinetic model of organelle biogenesis, which incorporates de novo synthesis, fission, fusion, and degradation, we explore the time-dependent dynamics of organelle abundance. While previous studies focused on steady-state properties, here we calculate the first two moments of: 1) organelle copy numbers over time, and 2) first passage times to reach a specified organelle count. We show that these two moments provide a powerful means to discriminate between different mechanisms of organelle biogenesis. Notably, the time-dependent behaviour of organelle biogenesis reveals richer dynamics compared to the steady-state scenario. Our findings shed light on how cells attain steady-state organelle abundance after cell division and environmental perturbation.

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