Nondestructive DNA extraction from specimens and bulk samples preserved in DESS solution for DNA barcoding

DNA barcoding of small organisms often requires significant damage or destroy specimens. To address this, the development of nondestructive DNA extraction methods that maintain specimen morphology is crucial. Here, we present a protocol using the supernatant of DESS preservation solution (20% DMSO, 250 mM EDTA, saturated NaCl), which conserve both the morphological characteristics and DNA of biological samples long-term. This method successfully conducted nondestructive barcoding of nematodes preserved in DESS and stored 10 years at room temperature. The protocol also applies to bulk environmental samples, where sediment and seagrass collected in the field are immediately preserved in DESS. This enables the subsequent isolation and individual nondestructive barcoding of meiofauna and diatoms from the preserved environmental samples in the laboratory.

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Publication Details

Journal
BioTechniques
Published
2025-08-03
DOI
https://doi.org/10.1080/07366205.2025.2542023
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Nondestructive DNA extraction from specimens and bulk samples preserved in DESS solution for DNA barcoding

Eri Ogiso‐Tanaka, Daisuke Shimada, Minako Abe Ito
BioTechniques
Environmental DNA in Biodiversity Studies
article

Nondestructive DNA extraction from specimens and bulk samples preserved in DESS solution for DNA barcoding

Eri Ogiso‐Tanaka, Daisuke Shimada, Minako Abe Ito
article en

Abstract

DNA barcoding of small organisms often requires significant damage or destroy specimens. To address this, the development of nondestructive DNA extraction methods that maintain specimen morphology is crucial. Here, we present a protocol using the supernatant of DESS preservation solution (20% DMSO, 250 mM EDTA, saturated NaCl), which conserve both the morphological characteristics and DNA of biological samples long-term. This method successfully conducted nondestructive barcoding of nematodes preserved in DESS and stored 10 years at room temperature. The protocol also applies to bulk environmental samples, where sediment and seagrass collected in the field are immediately preserved in DESS. This enables the subsequent isolation and individual nondestructive barcoding of meiofauna and diatoms from the preserved environmental samples in the laboratory.

BioTechniquesVol. 77(7-8)
Nihon University (JP), National Museum of Nature and Science (JP)
National Museum of Nature and Science
Life below water
Openalex Percentile: Top 80%
Environmental DNA in Biodiversity Studies
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Nondestructive DNA extraction from specimens and bulk samples preserved in DESS solution for DNA barcoding — Eri Ogiso‐Tanaka, Daisuke Shimada, et al. · BioTechniques (2025) | TGRS Research Map | TGRS