GenomicLayers: sequence-based simulation of epi-genomes

GenomicLayers enables scientists working on diverse eukaryotic organisms to test models of gene regulation in silico. Applications include epigenetic silencing, activation by combinatorial binding of transcription factors and the sink effects caused by down-regulation of components of epigenetic regulators. The software is intended to be used to parameterise, refine and combine models and thereby capitalise on data from the thousands of studies of Eukaryotic epigenomes.

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Publication Details

Journal
BMC Bioinformatics
Published
2025-08-04
DOI
https://doi.org/10.1186/s12859-025-06224-y
Primary Topic
Genomics and Chromatin Dynamics
Type
article
Field-Weighted Citation Impact
0.00

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article

GenomicLayers: sequence-based simulation of epi-genomes

Dave T. Gerrard
BMC Bioinformatics
Genomics and Chromatin Dynamics
article

GenomicLayers: sequence-based simulation of epi-genomes

Dave T. Gerrard
article en

Abstract

GenomicLayers enables scientists working on diverse eukaryotic organisms to test models of gene regulation in silico. Applications include epigenetic silencing, activation by combinatorial binding of transcription factors and the sink effects caused by down-regulation of components of epigenetic regulators. The software is intended to be used to parameterise, refine and combine models and thereby capitalise on data from the thousands of studies of Eukaryotic epigenomes.

BMC BioinformaticsVol. 26(1)
University of Manchester (GB)
University of Manchester
Life below water
Openalex Percentile: Top 82%
Genomics and Chromatin Dynamics
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