Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment

A strictly aerobic, Gram-stain-negative, ovoid-shaped and non-motile bacterium, designated as strain MJ-SS7<sup>T</sup>, was isolated from tidal mudflat sediment collected at a macro-tidal clam farm in Gochang, Republic of Korea. Strain MJ-SS7<sup>T</sup> exhibited oxidase- and catalase-positive activities. Growth occurred at 20-37 °C (optimum: 30 °C), pH 6-8 (optimum: pH 7) and in the presence of 0-9% (w/v) NaCl (optimum: 3%). Phylogenetic analysis based on 16S rRNA gene sequences revealed that MJ-SS7<sup>T</sup> belonged to the family <i>Roseobacteraceae</i>. Its closest relatives, based on sequence similarity, were <i>Rhodophyticola porphyridii</i> KACC 18805<sup>T</sup> (95.9%), <i>Kangsaoukella pontilimi</i> KCTC 72224<sup>T</sup> (95.8%) and <i>Actibacterium pelagium</i> JN33<sup>T</sup> (95.5%). The major fatty acids included summed feature 8 (C<sub>18:1</sub> <i> ω7c</i>/C<sub>18:1</sub> <i> ω6c</i>), C<sub>16:0</sub>, C<sub>16:0</sub> 2OH and C<sub>18:0</sub>. The major polar lipids consisted of phosphatidylglycerol, five unidentified phospholipids, four unidentified aminolipids, two unidentified aminophospholipids and four unidentified lipids. The major respiratory quinone was ubiquinone-10. The genome size was 5.20 Mb, with a DNA G+C content of 63.4 mol%, encoding 5,031 protein-coding genes, 3 rRNA genes and 46 tRNA genes. Comparative genomic analyses confirmed its novelty, with average nucleotide identity (<73%) and average amino acid identity (<70%) values below the species delineation thresholds. Based on polyphasic taxonomic data, strain MJ-SS7<sup>T</sup> represents a novel species of a new genus within the family <i>Roseobacteraceae</i>, for which the name <i>Ovoidimarina sediminis</i> gen. nov., sp. nov. is proposed. The type strain is MJ-SS7<sup>T</sup> (=KEMB 21436<sup>T</sup>=KCTC 8329<sup>T</sup>=JCM 36750<sup>T</sup>).

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Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2025-08-04
DOI
https://doi.org/10.1099/ijsem.0.006857
Citations
3
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
5.15

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article

Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment

Arumugam Kathiresan, Hee-Su Kim, Sathiyaraj Srinivasan, Cong Li et al.
3 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Microbial Community Ecology and Physiology
5.15
article

Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment

Arumugam Kathiresan, Hee-Su Kim, Sathiyaraj Srinivasan, Cong Li, Hyung‐Seop Kim, Sang‐Seob Lee, Jaincy N. Jayan, Ke Dong
article en
3 citations

Abstract

A strictly aerobic, Gram-stain-negative, ovoid-shaped and non-motile bacterium, designated as strain MJ-SS7<sup>T</sup>, was isolated from tidal mudflat sediment collected at a macro-tidal clam farm in Gochang, Republic of Korea. Strain MJ-SS7<sup>T</sup> exhibited oxidase- and catalase-positive activities. Growth occurred at 20-37 °C (optimum: 30 °C), pH 6-8 (optimum: pH 7) and in the presence of 0-9% (w/v) NaCl (optimum: 3%). Phylogenetic analysis based on 16S rRNA gene sequences revealed that MJ-SS7<sup>T</sup> belonged to the family <i>Roseobacteraceae</i>. Its closest relatives, based on sequence similarity, were <i>Rhodophyticola porphyridii</i> KACC 18805<sup>T</sup> (95.9%), <i>Kangsaoukella pontilimi</i> KCTC 72224<sup>T</sup> (95.8%) and <i>Actibacterium pelagium</i> JN33<sup>T</sup> (95.5%). The major fatty acids included summed feature 8 (C<sub>18:1</sub> <i> ω7c</i>/C<sub>18:1</sub> <i> ω6c</i>), C<sub>16:0</sub>, C<sub>16:0</sub> 2OH and C<sub>18:0</sub>. The major polar lipids consisted of phosphatidylglycerol, five unidentified phospholipids, four unidentified aminolipids, two unidentified aminophospholipids and four unidentified lipids. The major respiratory quinone was ubiquinone-10. The genome size was 5.20 Mb, with a DNA G+C content of 63.4 mol%, encoding 5,031 protein-coding genes, 3 rRNA genes and 46 tRNA genes. Comparative genomic analyses confirmed its novelty, with average nucleotide identity (<73%) and average amino acid identity (<70%) values below the species delineation thresholds. Based on polyphasic taxonomic data, strain MJ-SS7<sup>T</sup> represents a novel species of a new genus within the family <i>Roseobacteraceae</i>, for which the name <i>Ovoidimarina sediminis</i> gen. nov., sp. nov. is proposed. The type strain is MJ-SS7<sup>T</sup> (=KEMB 21436<sup>T</sup>=KCTC 8329<sup>T</sup>=JCM 36750<sup>T</sup>).

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 75(8)
Kunsan National University (KR), University of Shanghai for Science and Technology (CN), Kyonggi University (KR), Sungkyunkwan University (KR), Seoul Women's University (KR)
National Research Foundation, Korea Institute of Marine Science and Technology promotion
Life below water
Openalex Percentile: Top 5%
Microbial Community Ecology and Physiology
5.15
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