Transcriptomic Analysis of Taar5 Expression and Co-Expression Networks in the Cerebellum During Perinatal Development

<b>Background:</b> Dopamine participates in the cognitive cerebellar role and in cerebellum development. The trace amine-associated receptor (TAARs, TAAR1-TAAR9) system contributes to dopamine signaling tuning. So, the aim of the present study is the analysis of the TAARs' gene expression and functional associations in prenatal and neonatal mouse cerebellums. <b>Methods:</b> The transcriptomic data represented in the GEO repository was performed to identify Taars expression and co-expression patterns in embrionic and postnatal mouse cerebellum. <b>Results:</b> Open transcriptomic data analysis showed cerebellar expression of the <i>Taar5</i> gene mRNA both in prenatal and early postnatal samples. The identified <i>Taar5</i> expression was confirmed by RT-PCR in P5 mice. We identified the association between <i>Taar5</i> expression and the expression of proliferation-related genes in late prenatal E13.5 samples, which was replaced by co-expression with genes involved in metabolism in P5-6 samples. These associations are suggested to mirror the previously identified <i>Taar5</i> expression in Purkinje cells, which proliferate at the E13.5 and mature in the postnatal period. However, the analysis of TAAR5 co-expression with markers of different cell populations revealed the pronounced co-expression of TAAR5 in the P5-6 cerebellum with microglial markers, which is shifted to the association with astroglial markers in P10. <b>Conclusions:</b> The <i>Taar5</i> gene was found to be active in the cerebellum samples taken around birth, and its co-expression pattern differs in the embryo stage and the early days after birth. We suggest that the Taar5 receptor may be involved in cerebellum development; however, further research is necessary to elucidate its role in this process.

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Journal
Brain Sciences
Published
2025-07-25
DOI
https://doi.org/10.3390/brainsci15080791
Primary Topic
RNA regulation and disease
Type
article
Field-Weighted Citation Impact
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article

Transcriptomic Analysis of Taar5 Expression and Co-Expression Networks in the Cerebellum During Perinatal Development

Raul R. Gainetdinov, Anna B. Volnova, Ramilya Z. Murtazina, Vassiliy Tsytsarev et al.
Brain Sciences
RNA regulation and disease
article

Transcriptomic Analysis of Taar5 Expression and Co-Expression Networks in the Cerebellum During Perinatal Development

Raul R. Gainetdinov, Anna B. Volnova, Ramilya Z. Murtazina, Vassiliy Tsytsarev, Anastasia N. Vaganova, Evgeniya V. Efimova, Alena Borisovna Karaseva
article en

Abstract

<b>Background:</b> Dopamine participates in the cognitive cerebellar role and in cerebellum development. The trace amine-associated receptor (TAARs, TAAR1-TAAR9) system contributes to dopamine signaling tuning. So, the aim of the present study is the analysis of the TAARs' gene expression and functional associations in prenatal and neonatal mouse cerebellums. <b>Methods:</b> The transcriptomic data represented in the GEO repository was performed to identify Taars expression and co-expression patterns in embrionic and postnatal mouse cerebellum. <b>Results:</b> Open transcriptomic data analysis showed cerebellar expression of the <i>Taar5</i> gene mRNA both in prenatal and early postnatal samples. The identified <i>Taar5</i> expression was confirmed by RT-PCR in P5 mice. We identified the association between <i>Taar5</i> expression and the expression of proliferation-related genes in late prenatal E13.5 samples, which was replaced by co-expression with genes involved in metabolism in P5-6 samples. These associations are suggested to mirror the previously identified <i>Taar5</i> expression in Purkinje cells, which proliferate at the E13.5 and mature in the postnatal period. However, the analysis of TAAR5 co-expression with markers of different cell populations revealed the pronounced co-expression of TAAR5 in the P5-6 cerebellum with microglial markers, which is shifted to the association with astroglial markers in P10. <b>Conclusions:</b> The <i>Taar5</i> gene was found to be active in the cerebellum samples taken around birth, and its co-expression pattern differs in the embryo stage and the early days after birth. We suggest that the Taar5 receptor may be involved in cerebellum development; however, further research is necessary to elucidate its role in this process.

Brain SciencesVol. 15(8)
University of Maryland, Baltimore (US), St Petersburg University (RU), Institute of Experimental Medicine (RU)
Russian Science Foundation
Openalex Percentile: Top 83%
RNA regulation and disease
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